Alkaloid biosynthesis II - Reference pathway

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Reference pathway (KO) Reference pathway (EC) Reference pathway (Reaction) -----< Sort below by alphabet >----- Homo sapiens (human) Pan troglodytes (chimpanzee) Macaca mulatta (rhesus monkey) Mus musculus (mouse) Rattus norvegicus (rat) Canis familiaris (dog) Bos taurus (cow) Sus scrofa (pig) Equus caballus (horse) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Xenopus laevis (African clawed frog) Xenopus tropicalis (western clawed frog) Danio rerio (zebrafish) Fugu rubripes (Japanese puffer fish) Tetraodon nigroviridis (green spotted puffer) Oryzias latipes (Japanese medaka) Ciona intestinalis (sea squirt) Strongylocentrotus purpuratus (purple sea urchin) Nematostella vectensis (sea anemone) Drosophila melanogaster (fruit fly) Drosophila pseudoobscura Drosophila ananassae Drosophila erecta Drosophila persimilis Drosophila sechellia Drosophila simulans Drosophila willistoni Drosophila yakuba Drosophila grimshawi Drosophila mojavensis Drosophila virilis Anopheles gambiae (mosquito) Aedes aegypti (yellow fever mosquito) Apis mellifera (honey bee) Bombyx mori (silkmoth) Tribolium castaneum (red flour beetle) Caenorhabditis elegans (nematode) Caenorhabditis briggsae Brugia malayi (filaria) Trichoplax adhaerens Arabidopsis thaliana (thale cress) Populus trichocarpa (black cottonwood) Vitis vinifera (wine grape) Oryza sativa japonica (Japanese rice) Physcomitrella patens subsp. patens Ostreococcus lucimarinus Ostreococcus tauri Chlamydomonas reinhardtii Cyanidioschyzon merolae Saccharomyces cerevisiae Saccharomyces paradoxus Saccharomyces mikatae Saccharomyces bayanus Ashbya gossypii (Eremothecium gossypii) Kluyveromyces lactis Kluyveromyces waltii Debaryomyces hansenii Pichia stipitis Vanderwaltozyma polyspora Candida albicans Candida glabrata Yarrowia lipolytica Schizosaccharomyces pombe Neurospora crassa Podospora anserina Magnaporthe grisea Fusarium graminearum Aspergillus nidulans Aspergillus fumigatus Aspergillus oryzae Aspergillus niger Neosartorya fischeri Sclerotinia sclerotiorum Botryotinia fuckeliana Cryptococcus neoformans JEC21 Cryptococcus neoformans B-3501A Phanerochaete chrysosporium Laccaria bicolor Ustilago maydis Malassezia globosa Monosiga brevicollis Giardia lamblia Dictyostelium discoideum Plasmodium falciparum 3D7 Plasmodium falciparum Dd2 Plasmodium falciparum HB3 Plasmodium yoelii Plasmodium knowlesi Plasmodium vivax Theileria annulata Theileria parva Tetrahymena thermophila Paramecium tetraurelia Trypanosoma brucei Trypanosoma cruzi Leishmania major Entamoeba histolytica Trichomonas vaginalis Thalassiosira pseudonana Escherichia coli K-12 MG1655 Escherichia coli K-12 W3110 Escherichia coli K-12 DH10B Escherichia coli O157 EDL933 (EHEC) Escherichia coli O157 Sakai (EHEC) Escherichia coli O157 EC4115 (EHEC) Escherichia coli CFT073 (UPEC) Escherichia coli UTI89 (UPEC) Escherichia coli 536 (UPEC) Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli HS Escherichia coli SECEC Escherichia coli SE11 Escherichia coli ATCC 8739 Salmonella enterica subsp. enterica serovar Typhi CT18 Salmonella enterica subsp. enterica serovar Typhi Ty2 Salmonella enterica subsp. enterica serovar Paratyphi A Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601 Salmonella enterica subsp. enterica serovar Choleraesuis Salmonella enterica subsp. enterica serovar Newport Salmonella enterica subsp. enterica serovar Schwarzengrund Salmonella enterica subsp. enterica serovar Agona Salmonella enterica subsp. enterica serovar Dublin Salmonella enterica subsp. enterica serovar Enteritidis Salmonella enterica subsp. arizonae Yersinia pestis Mediaevails Yersinia pestis Antiqua Yersinia pestis Nepal516 Yersinia pestis Pestoides Yersinia pestis Angola Yersinia pseudotuberculosis IP32953 Yersinia pseudotuberculosis IP31758 Yersinia pseudotuberculosis YPIII Yersinia pseudotuberculosis PB1/+ Yersinia enterocolitica Shigella flexneri 2457T (serotype 2a) Shigella flexneri 8401 (serotype 5b) Shigella sonnei Shigella boydii CDC 3083-94 Erwinia carotovora Erwinia tasmaniensis Photorhabdus luminescens Enterobacter sakazakii Klebsiella pneumoniae Klebsiella pneumoniae 342 Serratia proteamaculans Proteus mirabilis Pasteurella multocida Mannheimia succiniciproducens Actinobacillus pleuropneumoniae L20 (serotype 5b) Actinobacillus pleuropneumoniae AP76 (serotype 7) Actinobacillus succinogenes Xylella fastidiosa 9a5c Xylella fastidiosa Temecula1 Xylella fastidiosa M12 Xylella fastidiosa M23 Xanthomonas campestris pv. campestris ATCC 33913 Xanthomonas campestris pv. campestris 8004 Xanthomonas campestris pv. campestris B100 Xanthomonas campestris pv. vesicatoria Xanthomonas axonopodis Xanthomonas oryzae MAFF311018 Xanthomonas oryzae PXO99A Stenotrophomonas maltophilia Stenotrophomonas maltophilia R551-3 Vibrio cholerae O1 Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Vibrio parahaemolyticus Vibrio fischeri Vibrio fischeri MJ11 Vibrio harveyi Photobacterium profundum Pseudomonas aeruginosa UCBPP-PA14 Pseudomonas aeruginosa PA7 Pseudomonas putida KT2440 Pseudomonas putida F1 Pseudomonas putida GB-1 Pseudomonas putida W619 Pseudomonas syringae pv. tomato DC3000 Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas fluorescens Pf-5 Pseudomonas fluorescens Pf0-1 Pseudomonas entomophila Pseudomonas mendocina Acinetobacter sp. ADP1 Acinetobacter baumannii ATCC 17978 Acinetobacter baumannii SDF Acinetobacter baumannii AYE Acinetobacter baumannii ACICU Shewanella amazonensis Shewanella baltica OS185 Shewanella baltica OS195 Shewanella pealeana Shewanella sp. ANA-3 Shewanella halifaxensis Shewanella woodyi ATCC51908 Colwellia psychrerythraea Saccharophagus degradans Marinobacter aquaeolei Coxiella burnetii RSA 331 Coxiella burnetii Dugway 5J108-111 Legionella pneumophila Philadelphia 1 Legionella pneumophila Paris Legionella pneumophila Corby Francisella tularensis subsp. tularensis SCHU S4 Francisella tularensis subsp. tularensis FSC 198 Francisella tularensis subsp. tularensis WY96-3418 Francisella tularensis subsp. holarctica LVS Francisella tularensis subsp. holarctica OSU18 Francisella tularensis subsp. holarctica FTNF002-00 Francisella tularensis subsp. novicida U112 Francisella tularensis subsp. mediasiatica FSC147 Francisella philomiragia Alcanivorax borkumensis Marinomonas sp. MWYL1 Aeromonas hydrophila Chromobacterium violaceum Ralstonia solanacearum Ralstonia pickettii Ralstonia eutropha JMP134 Ralstonia eutropha H16 Ralstonia metallidurans Cupriavidus taiwanensis Burkholderia mallei ATCC 23344 Burkholderia mallei SAVP1 Burkholderia mallei NCTC 10229 Burkholderia mallei NCTC 10247 Burkholderia xenovorans Burkholderia vietnamiensis Burkholderia sp. 383 Burkholderia cenocepacia AU1054 Burkholderia cenocepacia HI2424 Burkholderia cenocepacia MC0-3 Burkholderia cenocepacia J2315 Burkholderia cepacia Burkholderia ambifaria MC40-6 Burkholderia multivorans ATCC 17616 (JGI) Burkholderia multivorans ATCC 17616 (Tohoku) Burkholderia pseudomallei K96243 Burkholderia pseudomallei 1710b Burkholderia pseudomallei 1106a Burkholderia pseudomallei 668 Burkholderia thailandensis Burkholderia phymatum Burkholderia phytofirmans Bordetella bronchiseptica Bordetella petrii Bordetella avium Rhodoferax ferrireducens Polaromonas sp. JS666 Acidovorax avenae Verminephrobacter eiseniae Delftia acidovorans Minibacterium massiliensis Leptothrix cholodnii Nitrosospira multiformis Azoarcus sp. EbN1 Azoarcus sp. BH72 Dechloromonas aromatica Methylobacillus flagellatus Helicobacter hepaticus Wolinella succinogenes Campylobacter fetus Campylobacter curvus Campylobacter hominis ATCC BAA-381 Campylobacter concisus 13826 Arcobacter butzleri Geobacter lovleyi Geobacter bemidjiensis Pelobacter carbinolicus Bdellovibrio bacteriovorus Candidatus Desulfococcus oleovorans Sorangium cellulosum Syntrophus aciditrophicus Rickettsia felis Rickettsia bellii OSU 85-389 Anaplasma phagocytophilum Ehrlichia ruminantium Welgevonden (South Africa) Ehrlichia ruminantium Welgevonden (France) Ehrlichia canis Ehrlichia chaffeensis Candidatus Pelagibacter ubique Mesorhizobium loti Parvibaculum lavamentivorans Sinorhizobium meliloti Sinorhizobium medicae Agrobacterium tumefaciens C58 (UWash/Dupont) Agrobacterium tumefaciens C58 (Cereon) Rhizobium etli CFN 42 Rhizobium etli CIAT 652 Rhizobium leguminosarum Rhizobium leguminosarum bv. trifolii WSM2304 Brucella melitensis 16M Brucella melitensis biovar Abortus Brucella abortus 9-941 Ochrobactrum anthropi Bradyrhizobium japonicum Bradyrhizobium sp. ORS278 Bradyrhizobium sp. BTAi1 Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris TIE-1 Nitrobacter winogradskyi Bartonella bacilliformis Bartonella tribocorum Xanthobacter autotrophicus Azorhizobium caulinodans Methylobacterium extorquens Methylobacterium radiotolerans Methylobacterium sp. 4-46 Methylobacterium populi Beijerinckia indica Caulobacter sp. K31 Phenylobacterium zucineum Silicibacter pomeroyi Silicibacter sp. TM1040 Rhodobacter sphaeroides 2.4.1 Rhodobacter sphaeroides ATCC 17029 Rhodobacter sphaeroides ATCC 17025 Jannaschia sp. CCS1 Roseobacter denitrificans Paracoccus denitrificans Dinoroseobacter shibae Hyphomonas neptunium Zymomonas mobilis Sphingomonas wittichii Gluconobacter oxydans Granulobacter bethesdensis Gluconacetobacter diazotrophicus Rhodospirillum centenum Magnetospirillum magneticum Solibacter usitatus Bacillus subtilis Bacillus halodurans Bacillus anthracis Ames Bacillus anthracis Ames 0581 Bacillus anthracis A2012 Bacillus anthracis Sterne Bacillus cereus ATCC 14579 Bacillus cereus ATCC 10987 Bacillus cereus ZK Bacillus cereus subsp. cytotoxis NVH 391-98 Bacillus thuringiensis 97-27 Bacillus thuringiensis Al Hakam Bacillus weihenstephanensis Bacillus licheniformis ATCC 14580 Bacillus licheniformis DSM13 Bacillus clausii Bacillus amyloliquefaciens Bacillus pumilus Geobacillus kaustophilus Geobacillus thermodenitrificans Lysinibacillus sphaericus Exiguobacterium sibiricum Staphylococcus aureus N315 Staphylococcus aureus Mu50 Staphylococcus aureus Mu3 Staphylococcus aureus MW2 Staphylococcus aureus MRSA252 Staphylococcus aureus MSSA476 Staphylococcus aureus COL Staphylococcus aureus RF122 Staphylococcus aureus USA300 Staphylococcus aureus USA300 TCH1516 Staphylococcus aureus NCTC8325 Staphylococcus aureus JH9 Staphylococcus aureus JH1 Staphylococcus epidermidis ATCC 12228 Staphylococcus epidermidis RP62A Staphylococcus haemolyticus Staphylococcus saprophyticus Listeria monocytogenes EGD-e Listeria monocytogenes F2365 Listeria innocua Listeria welshimeri SLCC5334 Lactococcus lactis subsp. lactis IL1403 Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis subsp. cremoris MG1363 Streptococcus pyogenes SF370 (serotype M1) Streptococcus pyogenes MGAS5005 (serotype M1) Streptococcus pyogenes MGAS8232 (serotype M18) Streptococcus pyogenes MGAS315 (serotype M3) Streptococcus pyogenes SSI-1 (serotype M3) Streptococcus pyogenes MGAS10270 (serotype M3) Streptococcus pyogenes MGAS10750 (serotype M3) Streptococcus pyogenes MGAS2096 (serotype M3) Streptococcus pyogenes MGAS9429 (serotype M3) Streptococcus pyogenes Manfredo (serotype M5) Streptococcus pyogenes MGAS10394 (serotype M6) Streptococcus pyogenes MGAS6180 (serotype M28) Streptococcus pyogenes NZ131 (serotype M49) Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae R6 Streptococcus pneumoniae D39 Streptococcus pneumoniae CGSP14 Streptococcus pneumoniae G54 Streptococcus agalactiae 2603 (serotype V) Streptococcus agalactiae NEM316 (serotype III) Streptococcus agalactiae A909 (serotype Ia) Streptococcus suis 05ZYH33 Streptococcus suis 98HAH33 Streptococcus equi Lactobacillus plantarum Lactobacillus johnsonii Lactobacillus acidophilus Lactobacillus sakei Lactobacillus salivarius Lactobacillus delbrueckii ATCC BAA-365 Lactobacillus brevis Lactobacillus casei ATCC 334 Lactobacillus casei BL23 Lactobacillus gasseri Lactobacillus reuteri F275 (JGI) Lactobacillus reuteri F275 (Kitasato) Lactobacillus helveticus Lactobacillus fermentum Enterococcus faecalis Leuconostoc citreum Symbiobacterium thermophilum Clostridium tetani E88 Clostridium difficile Clostridium botulinum A ATCC 3502 Clostridium botulinum A ATCC 19397 Clostridium botulinum A Hall Clostridium botulinum A3 Loch Maree Clostridium botulinum B Eklund 17B Clostridium botulinum B1 Okra Clostridium botulinum E3 Clostridium botulinum F Langeland Clostridium beijerinckii Clostridium kluyveri Clostridium phytofermentans Alkaliphilus oremlandii Carboxydothermus hydrogenoformans Desulfitobacterium hafniense Heliobacterium modesticaldum Finegoldia magna Thermoanaerobacter tengcongensis Thermoanaerobacter sp. X514 Thermoanaerobacter pseudethanolicus Coprothermobacter proteolyticus Mycoplasma penetrans Acholeplasma laidlawii Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis F11 Mycobacterium bovis AF2122/97 Mycobacterium bovis BCG Pasteur 1173P2 Mycobacterium leprae Mycobacterium avium paratuberculosis Mycobacterium avium 104 Mycobacterium smegmatis Mycobacterium ulcerans Mycobacterium vanbaalenii Mycobacterium gilvum Mycobacterium abscessus ATCC 19977T Mycobacterium sp. MCS Mycobacterium sp. KMS Mycobacterium sp. JLS Mycobacterium marinum M Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) Corynebacterium glutamicum ATCC 13032 (Bielefeld) Corynebacterium efficiens Corynebacterium diphtheriae Corynebacterium urealyticum Nocardia farcinica Rhodococcus sp. RHA1 Streptomyces coelicolor Streptomyces avermitilis Streptomyces griseus Clavibacter michiganensis subsp. michiganensis Arthrobacter sp. FB24 Arthrobacter aurescens Propionibacterium acnes Frankia sp. CcI3 Frankia sp. EAN1pec Kineococcus radiotolerans Saccharopolyspora erythraea Salinispora arenicola Bifidobacterium longum NCC2705 Bifidobacterium longum DJO10A Fusobacterium nucleatum Rhodopirellula baltica Opitutus terrae Akkermansia muciniphila Leptospira interrogans serovar Copenhageni Leptospira biflexa serovar Patoc Patoc 1 (Paris) Leptospira biflexa serovar Patoc Patoc 1 (Ames) Synechococcus sp. CC9311 Cyanobacteria Yellowstone A-Prime Cyanobacteria Yellowstone B-Prime Anabaena sp. PCC7120 Nostoc punctiforme Anabaena variabilis Trichodesmium erythraeum Acaryochloris marina Bacteroides thetaiotaomicron Bacteroides fragilis YCH46 Bacteroides fragilis NCTC9343 Bacteroides vulgatus Parabacteroides distasonis Salinibacter ruber Cytophaga hutchinsonii Gramella forsetii Flavobacterium johnsoniae Roseiflexus sp. RS-1 Roseiflexus castenholzii DSM13941 Chloroflexus aurantiacus Herpetosiphon aurantiacus Deinococcus radiodurans Thermus thermophilus HB27 Thermus thermophilus HB8 Thermotoga lettingae Thermotoga sp. RQ2 Thermosipho melanesiensis Fervidobacterium nodosum Petrotoga mobilis Methanococcus maripaludis C6 Methanococcus maripaludis C7 Methanococcus aeolicus Methanococcus vannielii Methanosarcina acetivorans Methanosarcina barkeri Methanosarcina mazei Methanobrevibacter smithii ATCC 35061 Haloquadratum walsbyi Natronomonas pharaonis Picrophilus torridus Uncultured methanogenic archaeon RC-I Sulfolobus solfataricus Sulfolobus acidocaldarius     Current selection