Alkaloid biosynthesis I - Reference pathway

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Reference pathway (KO) Reference pathway (EC) Reference pathway (Reaction) -----< Sort below by alphabet >----- Homo sapiens (human) Pan troglodytes (chimpanzee) Macaca mulatta (rhesus monkey) Mus musculus (mouse) Rattus norvegicus (rat) Canis familiaris (dog) Bos taurus (cow) Sus scrofa (pig) Equus caballus (horse) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog) Danio rerio (zebrafish) Fugu rubripes (Japanese puffer fish) Tetraodon nigroviridis (green spotted puffer) Oryzias latipes (Japanese medaka) Ciona intestinalis (sea squirt) Strongylocentrotus purpuratus (purple sea urchin) Nematostella vectensis (sea anemone) Drosophila melanogaster (fruit fly) Drosophila pseudoobscura Drosophila ananassae Drosophila erecta Drosophila persimilis Drosophila sechellia Drosophila simulans Drosophila willistoni Drosophila yakuba Drosophila grimshawi Drosophila mojavensis Drosophila virilis Anopheles gambiae (mosquito) Aedes aegypti (yellow fever mosquito) Apis mellifera (honey bee) Bombyx mori (silkmoth) Tribolium castaneum (red flour beetle) Caenorhabditis elegans (nematode) Caenorhabditis briggsae Brugia malayi (filaria) Trichoplax adhaerens Arabidopsis thaliana (thale cress) Populus trichocarpa (black cottonwood) Vitis vinifera (wine grape) Oryza sativa japonica (Japanese rice) Physcomitrella patens subsp. patens Ostreococcus lucimarinus Ostreococcus tauri Chlamydomonas reinhardtii Cyanidioschyzon merolae Kluyveromyces waltii Neurospora crassa Podospora anserina Magnaporthe grisea Fusarium graminearum Aspergillus nidulans Aspergillus fumigatus Aspergillus oryzae Aspergillus niger Neosartorya fischeri Sclerotinia sclerotiorum Botryotinia fuckeliana Cryptococcus neoformans JEC21 Cryptococcus neoformans B-3501A Phanerochaete chrysosporium Laccaria bicolor Ustilago maydis Malassezia globosa Monosiga brevicollis Dictyostelium discoideum Tetrahymena thermophila Paramecium tetraurelia Trypanosoma cruzi Leishmania major Trichomonas vaginalis Thalassiosira pseudonana Escherichia coli K-12 MG1655 Escherichia coli K-12 W3110 Escherichia coli K-12 DH10B Escherichia coli O157 EDL933 (EHEC) Escherichia coli O157 Sakai (EHEC) Escherichia coli O157 EC4115 (EHEC) Escherichia coli CFT073 (UPEC) Escherichia coli UTI89 (UPEC) Escherichia coli 536 (UPEC) Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli HS Escherichia coli SECEC Escherichia coli SE11 Escherichia coli ATCC 8739 Salmonella enterica subsp. enterica serovar Typhi CT18 Salmonella enterica subsp. enterica serovar Typhi Ty2 Salmonella enterica subsp. enterica serovar Paratyphi A Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601 Salmonella enterica subsp. enterica serovar Paratyphi B Salmonella enterica subsp. enterica serovar Choleraesuis Salmonella enterica subsp. enterica serovar Heidelberg Salmonella enterica subsp. enterica serovar Newport Salmonella enterica subsp. enterica serovar Schwarzengrund Salmonella enterica subsp. enterica serovar Agona Salmonella enterica subsp. enterica serovar Dublin Salmonella enterica subsp. enterica serovar Gallinarum Salmonella enterica subsp. enterica serovar Enteritidis Salmonella enterica subsp. arizonae Salmonella typhimurium LT2 Yersinia pestis CO92 Yersinia pestis KIM Yersinia pestis Mediaevails Yersinia pestis Antiqua Yersinia pestis Nepal516 Yersinia pestis Pestoides Yersinia pestis Angola Yersinia pseudotuberculosis IP32953 Yersinia pseudotuberculosis IP31758 Yersinia pseudotuberculosis YPIII Yersinia pseudotuberculosis PB1/+ Yersinia enterocolitica Shigella flexneri 301 (serotype 2a) Shigella flexneri 2457T (serotype 2a) Shigella flexneri 8401 (serotype 5b) Shigella sonnei Shigella boydii Sb227 Shigella boydii CDC 3083-94 Shigella dysenteriae Erwinia carotovora Erwinia tasmaniensis Photorhabdus luminescens Sodalis glossinidius Enterobacter sp. 638 Enterobacter sakazakii Klebsiella pneumoniae Klebsiella pneumoniae 342 Citrobacter koseri ATCC BAA-895 Serratia proteamaculans Proteus mirabilis Haemophilus influenzae Rd KW20 (serotype d) Haemophilus influenzae 86-028NP (nontypeable) Haemophilus influenzae PittEE Haemophilus influenzae PittGG Haemophilus ducreyi Haemophilus somnus 129PT Haemophilus somnus 2336 Pasteurella multocida Mannheimia succiniciproducens Actinobacillus pleuropneumoniae L20 (serotype 5b) Actinobacillus pleuropneumoniae JL03 (serotype 3) Actinobacillus pleuropneumoniae AP76 (serotype 7) Actinobacillus succinogenes Xylella fastidiosa M12 Xylella fastidiosa M23 Xanthomonas campestris pv. campestris ATCC 33913 Xanthomonas campestris pv. campestris 8004 Xanthomonas campestris pv. vesicatoria Xanthomonas axonopodis Xanthomonas oryzae KACC10331 Xanthomonas oryzae MAFF311018 Stenotrophomonas maltophilia Vibrio cholerae O1 Vibrio cholerae O395 Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Vibrio parahaemolyticus Vibrio fischeri Vibrio harveyi Photobacterium profundum Pseudomonas aeruginosa PA7 Pseudomonas putida KT2440 Pseudomonas putida F1 Pseudomonas putida GB-1 Pseudomonas putida W619 Pseudomonas syringae pv. syringae B728a Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas fluorescens Pf-5 Pseudomonas fluorescens Pf0-1 Pseudomonas entomophila Pseudomonas mendocina Pseudomonas stutzeri Cellvibrio japonicus Psychrobacter arcticum Psychrobacter cryohalolentis Psychrobacter sp. PRwf-1 Acinetobacter sp. ADP1 Acinetobacter baumannii ATCC 17978 Acinetobacter baumannii SDF Acinetobacter baumannii AYE Acinetobacter baumannii ACICU Shewanella oneidensis Shewanella baltica OS185 Shewanella baltica OS195 Shewanella pealeana Shewanella halifaxensis Shewanella woodyi ATCC51908 Pseudoalteromonas atlantica Saccharophagus degradans Alteromonas macleodii Psychromonas ingrahamii Coxiella burnetii Dugway 5J108-111 Francisella philomiragia Marinomonas sp. MWYL1 Aeromonas hydrophila Aeromonas salmonicida Neisseria meningitidis MC58 (serogroup B) Neisseria meningitidis Z2491 (serogroup A) Neisseria meningitidis FAM18 (serogroup C) Neisseria meningitidis 053442 (serogroup C) Neisseria gonorrhoeae Chromobacterium violaceum Ralstonia solanacearum Ralstonia eutropha H16 Ralstonia metallidurans Burkholderia mallei ATCC 23344 Burkholderia mallei SAVP1 Burkholderia mallei NCTC 10229 Burkholderia mallei NCTC 10247 Burkholderia xenovorans Burkholderia sp. 383 Burkholderia cenocepacia MC0-3 Burkholderia cenocepacia J2315 Burkholderia ambifaria MC40-6 Burkholderia multivorans ATCC 17616 (JGI) Burkholderia pseudomallei K96243 Burkholderia pseudomallei 1710b Burkholderia pseudomallei 1106a Burkholderia pseudomallei 668 Burkholderia thailandensis Burkholderia phymatum Burkholderia phytofirmans Polynucleobacter necessarius Bordetella pertussis Bordetella parapertussis Bordetella bronchiseptica Bordetella petrii Bordetella avium Delftia acidovorans Methylibium petroleiphilum Herminiimonas arsenicoxydans Minibacterium massiliensis Leptothrix cholodnii Nitrosomonas europaea Nitrosospira multiformis Azoarcus sp. BH72 Helicobacter pylori 26695 Helicobacter pylori J99 Helicobacter pylori HPAG1 Helicobacter pylori Shi470 Helicobacter pylori G27 Helicobacter pylori P12 Helicobacter hepaticus Helicobacter acinonychis Wolinella succinogenes Thiomicrospira denitrificans Campylobacter jejuni NCTC11168 Campylobacter jejuni RM1221 Campylobacter jejuni 81-176 Campylobacter jejuni 81116 Campylobacter jejuni subsp. doylei 269.97 Campylobacter fetus Campylobacter hominis ATCC BAA-381 Campylobacter concisus 13826 Arcobacter butzleri Nitratiruptor sp. SB155-2 Sulfurovum sp. NBC37-1 Geobacter lovleyi Geobacter bemidjiensis Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris DP4 Desulfovibrio desulfuricans Anaeromyxobacter sp. Fw109-5 Sorangium cellulosum Mesorhizobium loti Parvibaculum lavamentivorans Sinorhizobium meliloti Sinorhizobium medicae Agrobacterium tumefaciens C58 (UWash/Dupont) Agrobacterium tumefaciens C58 (Cereon) Rhizobium etli CFN 42 Rhizobium etli CIAT 652 Rhizobium leguminosarum Rhizobium leguminosarum bv. trifolii WSM2304 Brucella abortus S19 Brucella suis ATCC 23445 Brucella ovis Brucella canis Ochrobactrum anthropi Bradyrhizobium sp. ORS278 Bradyrhizobium sp. BTAi1 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris TIE-1 Nitrobacter winogradskyi Nitrobacter hamburgensis Xanthobacter autotrophicus Azorhizobium caulinodans Methylobacterium radiotolerans Methylobacterium sp. 4-46 Methylobacterium populi Beijerinckia indica Caulobacter sp. K31 Silicibacter pomeroyi Silicibacter sp. TM1040 Rhodobacter sphaeroides 2.4.1 Rhodobacter sphaeroides ATCC 17029 Rhodobacter sphaeroides ATCC 17025 Roseobacter denitrificans Paracoccus denitrificans Dinoroseobacter shibae Hyphomonas neptunium Novosphingobium aromaticivorans Sphingomonas wittichii Erythrobacter litoralis Gluconacetobacter diazotrophicus Solibacter usitatus Bacillus subtilis Bacillus halodurans Bacillus cereus ATCC 10987 Bacillus licheniformis ATCC 14580 Bacillus licheniformis DSM13 Bacillus amyloliquefaciens Lysinibacillus sphaericus Listeria monocytogenes F2365 Listeria welshimeri SLCC5334 Lactobacillus casei BL23 Clostridium tetani E88 Clostridium botulinum A ATCC 3502 Clostridium botulinum A ATCC 19397 Clostridium botulinum A Hall Clostridium botulinum B Eklund 17B Clostridium botulinum E3 Clostridium beijerinckii Clostridium phytofermentans Mycobacterium avium 104 Mycobacterium smegmatis Mycobacterium abscessus ATCC 19977T Mycobacterium marinum M Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) Corynebacterium efficiens Rhodococcus sp. RHA1 Streptomyces coelicolor Streptomyces avermitilis Streptomyces griseus Clavibacter michiganensis subsp. michiganensis Frankia sp. CcI3 Frankia sp. EAN1pec Frankia alni Kineococcus radiotolerans Saccharopolyspora erythraea Salinispora arenicola Bifidobacterium longum DJO10A Rubrobacter xylanophilus Rhodopirellula baltica Opitutus terrae Leptospira biflexa serovar Patoc Patoc 1 (Paris) Leptospira biflexa serovar Patoc Patoc 1 (Ames) Synechocystis sp. PCC6803 Synechococcus elongatus PCC6301 Synechococcus elongatus PCC7942 Synechococcus sp. CC9605 Synechococcus sp. CC9902 Synechococcus sp. RCC307 Synechococcus sp. WH7803 Gloeobacter violaceus Anabaena sp. PCC7120 Nostoc punctiforme Prochlorococcus marinus SS120 Prochlorococcus marinus MED4 Prochlorococcus marinus MIT9313 Prochlorococcus marinus NATL2A Prochlorococcus marinus MIT9312 Prochlorococcus marinus MIT 9215 Prochlorococcus marinus MIT 9211 Bacteroides thetaiotaomicron Bacteroides fragilis YCH46 Bacteroides fragilis NCTC9343 Bacteroides vulgatus Parabacteroides distasonis Flavobacterium johnsoniae Chloroflexus aurantiacus Uncultured Termite group 1 bacterium phylotype Rs-D17 Deinococcus radiodurans Deinococcus geothermalis Methanococcus jannaschii Methanococcus maripaludis S2 Methanococcus maripaludis C5 Methanococcus maripaludis C6 Methanococcus maripaludis C7 Methanococcus aeolicus Methanococcus vannielii Methanosarcina acetivorans Methanosarcina barkeri Methanosarcina mazei Methanococcoides burtonii Methanosaeta thermophila Methanocorpusculum labreanum Methanoculleus marisnigri Candidatus Methanoregula boonei Methanobacterium thermoautotrophicum Methanosphaera stadtmanae Methanobrevibacter smithii ATCC 35061 Archaeoglobus fulgidus Halobacterium sp. NRC-1 Halobacterium salinarum R1 Picrophilus torridus Pyrococcus horikoshii Pyrococcus abyssi Pyrococcus furiosus Thermococcus kodakaraensis Thermococcus onnurineus Uncultured methanogenic archaeon RC-I Staphylothermus marinus     Current selection