Carotenoid biosynthesis - General - Reference pathway

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Reference pathway (KO) Reference pathway (EC) Reference pathway (Reaction) -----< Sort below by alphabet >----- Arabidopsis thaliana (thale cress) Populus trichocarpa (black cottonwood) Vitis vinifera (wine grape) Oryza sativa japonica (Japanese rice) Physcomitrella patens subsp. patens Ostreococcus lucimarinus Ostreococcus tauri Chlamydomonas reinhardtii Cyanidioschyzon merolae Photorhabdus luminescens Enterobacter sakazakii Vibrio harveyi Pseudomonas putida KT2440 Pseudomonas putida GB-1 Pseudomonas putida W619 Pseudomonas entomophila Pseudomonas stutzeri Halorhodospira halophila Bdellovibrio bacteriovorus Myxococcus xanthus Sorangium cellulosum Candidatus Pelagibacter ubique Bradyrhizobium sp. ORS278 Bradyrhizobium sp. BTAi1 Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris TIE-1 Xanthobacter autotrophicus Methylobacterium extorquens Methylobacterium radiotolerans Methylobacterium sp. 4-46 Methylobacterium populi Caulobacter sp. K31 Rhodobacter sphaeroides 2.4.1 Rhodobacter sphaeroides ATCC 17029 Rhodobacter sphaeroides ATCC 17025 Jannaschia sp. CCS1 Roseobacter denitrificans Dinoroseobacter shibae Novosphingobium aromaticivorans Sphingopyxis alaskensis Erythrobacter litoralis Rhodospirillum rubrum Rhodospirillum centenum Acidobacteria bacterium Bacillus pumilus Exiguobacterium sibiricum Staphylococcus aureus N315 Staphylococcus aureus Mu50 Staphylococcus aureus Mu3 Staphylococcus aureus MW2 Staphylococcus aureus MRSA252 Staphylococcus aureus MSSA476 Staphylococcus aureus COL Staphylococcus aureus RF122 Staphylococcus aureus USA300 Staphylococcus aureus USA300 TCH1516 Staphylococcus aureus NCTC8325 Staphylococcus aureus JH9 Staphylococcus aureus JH1 Staphylococcus aureus Newman Staphylococcus haemolyticus Lactobacillus plantarum Leuconostoc mesenteroides Acholeplasma laidlawii Mycobacterium avium paratuberculosis Mycobacterium avium 104 Mycobacterium smegmatis Mycobacterium vanbaalenii Mycobacterium gilvum Mycobacterium sp. MCS Mycobacterium sp. KMS Mycobacterium sp. JLS Mycobacterium marinum M Corynebacterium glutamicum R Nocardia farcinica Rhodococcus sp. RHA1 Streptomyces coelicolor Streptomyces avermitilis Streptomyces griseus Clavibacter michiganensis subsp. sepedonicus Arthrobacter aurescens Kocuria rhizophila Thermobifida fusca Kineococcus radiotolerans Saccharopolyspora erythraea Salinispora tropica Salinispora arenicola Rubrobacter xylanophilus Rhodopirellula baltica Opitutus terrae Leptospira borgpetersenii L550 Synechocystis sp. PCC6803 Synechococcus sp. WH8102 Synechococcus elongatus PCC6301 Synechococcus elongatus PCC7942 Synechococcus sp. CC9605 Synechococcus sp. CC9902 Synechococcus sp. CC9311 Synechococcus sp. RCC307 Synechococcus sp. WH7803 Synechococcus sp. PCC7002 Cyanobacteria Yellowstone A-Prime Cyanobacteria Yellowstone B-Prime Thermosynechococcus elongatus Microcystis aeruginosa Cyanothece sp. ATCC 51142 Gloeobacter violaceus Anabaena sp. PCC7120 Nostoc punctiforme Anabaena variabilis Prochlorococcus marinus SS120 Prochlorococcus marinus MED4 Prochlorococcus marinus MIT9313 Prochlorococcus marinus NATL2A Prochlorococcus marinus MIT9312 Prochlorococcus marinus AS9601 Prochlorococcus marinus MIT 9515 Prochlorococcus marinus MIT 9303 Prochlorococcus marinus MIT 9301 Prochlorococcus marinus MIT 9215 Prochlorococcus marinus MIT 9211 Prochlorococcus marinus NATL1A Trichodesmium erythraeum Acaryochloris marina Salinibacter ruber Cytophaga hutchinsonii Gramella forsetii Flavobacterium johnsoniae Flavobacterium psychrophilum Chlorobaculum tepidum Chlorobaculum parvum NCIB 8327 Chlorobium chlorochromatii Chlorobium phaeobacteroides DSM 266 Chlorobium phaeobacteroides BS1 Chlorobium limicola Prosthecochloris vibrioformis Pelodictyon luteolum Pelodictyon phaeoclathratiforme Chloroherpeton thalassium Prosthecochloris aestuarii Roseiflexus sp. RS-1 Roseiflexus castenholzii DSM13941 Chloroflexus aurantiacus Herpetosiphon aurantiacus Deinococcus radiodurans Deinococcus geothermalis Thermus thermophilus HB27 Thermus thermophilus HB8 Methanoculleus marisnigri Methanobacterium thermoautotrophicum Halobacterium sp. NRC-1 Halobacterium salinarum R1 Haloarcula marismortui Haloquadratum walsbyi Natronomonas pharaonis Picrophilus torridus Sulfolobus solfataricus Sulfolobus acidocaldarius Metallosphaera sedula Pyrobaculum arsenaticum Candidatus Korarchaeum cryptofilum General Organism group-specific     Current selection