Trinitrotoluene degradation - Reference pathway

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Reference pathway (KO) Reference pathway (EC) Reference pathway (Reaction) -----< Sort below by alphabet >----- Ciona intestinalis (sea squirt) Populus trichocarpa (black cottonwood) Ostreococcus tauri Saccharomyces bayanus Escherichia coli K-12 MG1655 Escherichia coli K-12 W3110 Escherichia coli K-12 DH10B Escherichia coli O157 EDL933 (EHEC) Escherichia coli O157 Sakai (EHEC) Escherichia coli O157 EC4115 (EHEC) Escherichia coli CFT073 (UPEC) Escherichia coli UTI89 (UPEC) Escherichia coli 536 (UPEC) Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli HS Escherichia coli SECEC Escherichia coli SE11 Escherichia coli ATCC 8739 Salmonella enterica subsp. enterica serovar Typhi CT18 Salmonella enterica subsp. enterica serovar Typhi Ty2 Salmonella enterica subsp. enterica serovar Paratyphi A Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601 Salmonella enterica subsp. enterica serovar Paratyphi B Salmonella enterica subsp. enterica serovar Choleraesuis Salmonella enterica subsp. enterica serovar Heidelberg Salmonella enterica subsp. enterica serovar Newport Salmonella enterica subsp. enterica serovar Schwarzengrund Salmonella enterica subsp. enterica serovar Agona Salmonella enterica subsp. enterica serovar Dublin Salmonella enterica subsp. enterica serovar Gallinarum Salmonella enterica subsp. enterica serovar Enteritidis Salmonella enterica subsp. arizonae Salmonella typhimurium LT2 Yersinia pestis CO92 Yersinia pestis KIM Yersinia pestis Mediaevails Yersinia pestis Antiqua Yersinia pestis Nepal516 Yersinia pestis Pestoides Yersinia pestis Angola Yersinia pseudotuberculosis IP32953 Yersinia pseudotuberculosis IP31758 Yersinia pseudotuberculosis YPIII Yersinia pseudotuberculosis PB1/+ Yersinia enterocolitica Shigella flexneri 301 (serotype 2a) Shigella flexneri 2457T (serotype 2a) Shigella flexneri 8401 (serotype 5b) Shigella sonnei Shigella boydii Sb227 Shigella boydii CDC 3083-94 Shigella dysenteriae Erwinia carotovora Erwinia tasmaniensis Photorhabdus luminescens Enterobacter sp. 638 Enterobacter sakazakii Klebsiella pneumoniae Klebsiella pneumoniae 342 Citrobacter koseri ATCC BAA-895 Serratia proteamaculans Haemophilus influenzae PittEE Haemophilus influenzae PittGG Haemophilus somnus 2336 Mannheimia succiniciproducens Actinobacillus pleuropneumoniae L20 (serotype 5b) Actinobacillus pleuropneumoniae JL03 (serotype 3) Actinobacillus pleuropneumoniae AP76 (serotype 7) Actinobacillus succinogenes Xanthomonas campestris pv. campestris B100 Xanthomonas oryzae PXO99A Stenotrophomonas maltophilia Stenotrophomonas maltophilia R551-3 Vibrio cholerae O1 Vibrio cholerae O395 Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Vibrio parahaemolyticus Vibrio fischeri Vibrio fischeri MJ11 Vibrio harveyi Photobacterium profundum Pseudomonas putida KT2440 Pseudomonas putida F1 Pseudomonas putida GB-1 Pseudomonas putida W619 Pseudomonas syringae pv. tomato DC3000 Pseudomonas syringae pv. syringae B728a Pseudomonas fluorescens Pf-5 Pseudomonas fluorescens Pf0-1 Pseudomonas entomophila Pseudomonas mendocina Psychrobacter arcticum Psychrobacter cryohalolentis Psychrobacter sp. PRwf-1 Acinetobacter sp. ADP1 Acinetobacter baumannii ATCC 17978 Acinetobacter baumannii AYE Acinetobacter baumannii ACICU Shewanella oneidensis Shewanella denitrificans Shewanella frigidimarina Shewanella amazonensis Shewanella baltica OS155 Shewanella baltica OS185 Shewanella baltica OS195 Shewanella loihica Shewanella putrefaciens Shewanella sediminis Shewanella pealeana Shewanella sp. MR-4 Shewanella sp. MR-7 Shewanella sp. ANA-3 Shewanella sp. W3-18-1 Shewanella halifaxensis Shewanella woodyi ATCC51908 Colwellia psychrerythraea Pseudoalteromonas haloplanktis Marinobacter aquaeolei Alteromonas macleodii Psychromonas ingrahamii Methylococcus capsulatus Francisella tularensis subsp. tularensis SCHU S4 Francisella tularensis subsp. tularensis FSC 198 Francisella tularensis subsp. tularensis WY96-3418 Francisella tularensis subsp. holarctica LVS Francisella tularensis subsp. holarctica OSU18 Francisella tularensis subsp. holarctica FTNF002-00 Francisella tularensis subsp. novicida U112 Francisella tularensis subsp. mediasiatica FSC147 Francisella philomiragia Thiomicrospira crunogena Alkalilimnicola ehrlichei Hahella chejuensis Chromohalobacter salexigens Marinomonas sp. MWYL1 Aeromonas hydrophila Aeromonas salmonicida Acidithiobacillus ferrooxidans Neisseria meningitidis 053442 (serogroup C) Neisseria gonorrhoeae NCCP11945 Chromobacterium violaceum Ralstonia solanacearum Ralstonia pickettii Ralstonia eutropha JMP134 Ralstonia eutropha H16 Ralstonia metallidurans Burkholderia xenovorans Burkholderia vietnamiensis Burkholderia sp. 383 Burkholderia cenocepacia AU1054 Burkholderia cenocepacia HI2424 Burkholderia cenocepacia MC0-3 Burkholderia cenocepacia J2315 Burkholderia cepacia Burkholderia ambifaria MC40-6 Burkholderia multivorans ATCC 17616 (JGI) Burkholderia multivorans ATCC 17616 (Tohoku) Burkholderia pseudomallei 668 Burkholderia phymatum Burkholderia phytofirmans Polynucleobacter sp. QLW-P1DMWA-1 Polynucleobacter necessarius Bordetella pertussis Bordetella parapertussis Bordetella bronchiseptica Bordetella petrii Bordetella avium Rhodoferax ferrireducens Polaromonas naphthalenivorans Delftia acidovorans Methylibium petroleiphilum Herminiimonas arsenicoxydans Leptothrix cholodnii Azoarcus sp. BH72 Dechloromonas aromatica Thiobacillus denitrificans Methylobacillus flagellatus Campylobacter concisus 13826 Nitratiruptor sp. SB155-2 Sulfurovum sp. NBC37-1 Geobacter sulfurreducens Geobacter uraniumreducens Geobacter lovleyi Geobacter bemidjiensis Pelobacter carbinolicus Pelobacter propionicus Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris DP4 Desulfovibrio desulfuricans Desulfotalea psychrophila Candidatus Desulfococcus oleovorans Sorangium cellulosum Syntrophus aciditrophicus Syntrophobacter fumaroxidans Mesorhizobium loti Agrobacterium tumefaciens C58 (UWash/Dupont) Agrobacterium tumefaciens C58 (Cereon) Rhizobium etli CIAT 652 Rhizobium leguminosarum bv. trifolii WSM2304 Brucella abortus S19 Brucella canis Ochrobactrum anthropi Bradyrhizobium japonicum Bradyrhizobium sp. ORS278 Bradyrhizobium sp. BTAi1 Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris TIE-1 Xanthobacter autotrophicus Azorhizobium caulinodans Methylobacterium extorquens Methylobacterium radiotolerans Methylobacterium sp. 4-46 Methylobacterium populi Beijerinckia indica Caulobacter sp. K31 Phenylobacterium zucineum Rhodobacter sphaeroides 2.4.1 Rhodobacter sphaeroides ATCC 17029 Rhodobacter sphaeroides ATCC 17025 Sphingomonas wittichii Granulobacter bethesdensis Acidiphilium cryptum JF-5 Gluconacetobacter diazotrophicus Rhodospirillum rubrum Rhodospirillum centenum Magnetospirillum magneticum Magnetococcus sp. MC-1 Solibacter usitatus Syntrophomonas wolfei Caldicellulosiruptor saccharolyticus Clostridium acetobutylicum Clostridium tetani E88 Clostridium novyi Clostridium thermocellum Clostridium botulinum A ATCC 3502 Clostridium botulinum A ATCC 19397 Clostridium botulinum A Hall Clostridium botulinum A3 Loch Maree Clostridium botulinum B1 Okra Clostridium botulinum F Langeland Clostridium beijerinckii Clostridium kluyveri Carboxydothermus hydrogenoformans Desulfitobacterium hafniense Desulfotomaculum reducens Candidatus Desulforudis audaxviator Finegoldia magna Moorella thermoacetica Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis F11 Mycobacterium bovis AF2122/97 Mycobacterium bovis BCG Pasteur 1173P2 Mycobacterium avium 104 Mycobacterium smegmatis Mycobacterium ulcerans Mycobacterium vanbaalenii Mycobacterium gilvum Mycobacterium abscessus ATCC 19977T Mycobacterium sp. MCS Mycobacterium sp. KMS Mycobacterium sp. JLS Mycobacterium marinum M Rhodococcus sp. RHA1 Nocardioides sp. JS614 Frankia sp. EAN1pec Acidothermus cellulolyticus Saccharopolyspora erythraea Salinispora arenicola Rubrobacter xylanophilus Opitutus terrae Methylacidiphilum infernorum Akkermansia muciniphila Synechococcus elongatus PCC6301 Synechococcus elongatus PCC7942 Microcystis aeruginosa Cyanothece sp. ATCC 51142 Nostoc punctiforme Anabaena variabilis Acaryochloris marina Gramella forsetii Flavobacterium johnsoniae Flavobacterium psychrophilum Chlorobaculum tepidum Chlorobaculum parvum NCIB 8327 Chlorobium phaeobacteroides DSM 266 Chlorobium phaeobacteroides BS1 Chlorobium limicola Pelodictyon luteolum Pelodictyon phaeoclathratiforme Prosthecochloris aestuarii Dehalococcoides ethenogenes Dehalococcoides sp. CBDB1 Dehalococcoides sp. BAV1 Roseiflexus sp. RS-1 Roseiflexus castenholzii DSM13941 Chloroflexus aurantiacus Aquifex aeolicus Hydrogenobaculum sp. Y04AAS1 Thermosipho melanesiensis Petrotoga mobilis Thermodesulfovibrio yellowstonii Methanococcus jannaschii Methanococcus maripaludis S2 Methanococcus maripaludis C5 Methanococcus maripaludis C6 Methanococcus maripaludis C7 Methanococcus aeolicus Methanococcus vannielii Methanosarcina acetivorans Methanosarcina barkeri Methanosarcina mazei Methanococcoides burtonii Methanosaeta thermophila Methanospirillum hungatei Candidatus Methanoregula boonei Methanobacterium thermoautotrophicum Methanopyrus kandleri Archaeoglobus fulgidus Haloquadratum walsbyi Thermococcus onnurineus Uncultured methanogenic archaeon RC-I Staphylothermus marinus Ignicoccus hospitalis Hyperthermus butylicus Sulfolobus solfataricus Sulfolobus tokodaii Sulfolobus acidocaldarius Metallosphaera sedula Pyrobaculum aerophilum Pyrobaculum islandicum Pyrobaculum calidifontis Pyrobaculum arsenaticum Thermoproteus neutrophilus Thermofilum pendens Candidatus Korarchaeum cryptofilum     Current selection