Fluorene degradation - Reference pathway

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Reference pathway Reference pathway (KO) Reference pathway (EC) Reference pathway (Reaction) -----< Sort below by alphabet >----- Canis familiaris (dog) Arabidopsis thaliana (thale cress) Debaryomyces hansenii Schizosaccharomyces pombe Magnaporthe grisea Aspergillus fumigatus Ustilago maydis Leishmania major Escherichia coli K-12 MG1655 Escherichia coli K-12 W3110 Escherichia coli O157 EDL933 (EHEC) Escherichia coli O157 Sakai (EHEC) Escherichia coli O157 EC4115 (EHEC) Escherichia coli E24377A Escherichia coli HS Escherichia coli SECEC Escherichia coli SE11 Escherichia coli ATCC 8739 Yersinia pestis CO92 Yersinia pestis KIM Yersinia pestis Mediaevails Yersinia pestis Antiqua Yersinia pestis Nepal516 Yersinia pestis Pestoides Yersinia pseudotuberculosis IP32953 Shigella sonnei Erwinia carotovora Photorhabdus luminescens Klebsiella pneumoniae Klebsiella pneumoniae 342 Serratia proteamaculans Xanthomonas campestris pv. campestris ATCC 33913 Xanthomonas campestris pv. campestris 8004 Xanthomonas campestris pv. vesicatoria Xanthomonas axonopodis Vibrio fischeri Pseudomonas putida KT2440 Pseudomonas putida F1 Pseudomonas putida W619 Pseudomonas syringae pv. syringae B728a Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas fluorescens Pf-5 Pseudomonas entomophila Acinetobacter sp. ADP1 Acinetobacter baumannii AYE Shewanella oneidensis Shewanella denitrificans Pseudoalteromonas haloplanktis Alkalilimnicola ehrlichei Chromobacterium violaceum Ralstonia solanacearum Ralstonia pickettii Ralstonia eutropha JMP134 Ralstonia eutropha H16 Ralstonia metallidurans Cupriavidus taiwanensis Burkholderia mallei ATCC 23344 Burkholderia mallei SAVP1 Burkholderia mallei NCTC 10229 Burkholderia mallei NCTC 10247 Burkholderia xenovorans Burkholderia vietnamiensis Burkholderia sp. 383 Burkholderia cenocepacia AU1054 Burkholderia cenocepacia HI2424 Burkholderia cenocepacia J2315 Burkholderia cepacia Burkholderia pseudomallei K96243 Burkholderia pseudomallei 1710b Burkholderia pseudomallei 1106a Burkholderia pseudomallei 668 Burkholderia thailandensis Burkholderia phymatum Burkholderia phytofirmans Bordetella pertussis Bordetella parapertussis Bordetella bronchiseptica Rhodoferax ferrireducens Polaromonas sp. JS666 Polaromonas naphthalenivorans Acidovorax avenae Acidovorax sp. JS42 Verminephrobacter eiseniae Methylibium petroleiphilum Herminiimonas arsenicoxydans Leptothrix cholodnii Nitrosomonas europaea Azoarcus sp. BH72 Dechloromonas aromatica Helicobacter pylori 26695 Helicobacter pylori J99 Helicobacter pylori HPAG1 Helicobacter acinonychis Wolinella succinogenes Campylobacter jejuni NCTC11168 Campylobacter jejuni RM1221 Campylobacter jejuni 81-176 Campylobacter jejuni subsp. doylei 269.97 Campylobacter fetus Campylobacter curvus Campylobacter hominis ATCC BAA-381 Arcobacter butzleri Geobacter sulfurreducens Geobacter metallireducens Geobacter uraniumreducens Pelobacter carbinolicus Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris DP4 Syntrophobacter fumaroxidans Candidatus Pelagibacter ubique Mesorhizobium loti Mesorhizobium sp. BNC1 Sinorhizobium meliloti Agrobacterium tumefaciens C58 (UWash/Dupont) Agrobacterium tumefaciens C58 (Cereon) Rhizobium etli CFN 42 Rhizobium leguminosarum Brucella melitensis 16M Brucella melitensis biovar Abortus Brucella abortus 9-941 Brucella suis 1330 Brucella ovis Bradyrhizobium japonicum Bradyrhizobium sp. ORS278 Bradyrhizobium sp. BTAi1 Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisA53 Bartonella henselae Bartonella quintana Bartonella bacilliformis Bartonella tribocorum Xanthobacter autotrophicus Caulobacter crescentus Silicibacter pomeroyi Silicibacter sp. TM1040 Rhodobacter sphaeroides 2.4.1 Rhodobacter sphaeroides ATCC 17025 Roseobacter denitrificans Paracoccus denitrificans Novosphingobium aromaticivorans Sphingopyxis alaskensis Sphingomonas wittichii Bacillus subtilis Bacillus halodurans Bacillus cereus ATCC 10987 Bacillus thuringiensis Al Hakam Bacillus licheniformis ATCC 14580 Bacillus licheniformis DSM13 Bacillus clausii Geobacillus thermodenitrificans Lactococcus lactis subsp. cremoris MG1363 Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae R6 Streptococcus pneumoniae D39 Lactobacillus plantarum Lactobacillus sakei Lactobacillus brevis Symbiobacterium thermophilum Carboxydothermus hydrogenoformans Desulfitobacterium hafniense Pelotomaculum thermopropionicum Moorella thermoacetica Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis H37Ra Mycobacterium bovis AF2122/97 Mycobacterium bovis BCG Pasteur 1173P2 Mycobacterium avium paratuberculosis Mycobacterium avium 104 Mycobacterium smegmatis Mycobacterium ulcerans Mycobacterium vanbaalenii Mycobacterium gilvum Mycobacterium sp. MCS Mycobacterium sp. KMS Mycobacterium sp. JLS Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) Nocardia farcinica Rhodococcus sp. RHA1 Streptomyces coelicolor Arthrobacter aurescens Nocardioides sp. JS614 Frankia sp. CcI3 Frankia alni Saccharopolyspora erythraea Salinispora tropica Salinispora arenicola Rhodopirellula baltica Anabaena sp. PCC7120 Bacteroides vulgatus Cytophaga hutchinsonii Flavobacterium johnsoniae Roseiflexus sp. RS-1 Roseiflexus castenholzii DSM13941 Chloroflexus aurantiacus Deinococcus geothermalis Thermus thermophilus HB8 Methanobacterium thermoautotrophicum Haloquadratum walsbyi Natronomonas pharaonis Nitrosopumilus maritimus     Current selection