Lipopolysaccharide biosynthesis - Reference pathway

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Reference pathway (KO) Reference pathway (EC) Reference pathway (Reaction) -----< Sort below by alphabet >----- Fugu rubripes (Japanese puffer fish) Tetraodon nigroviridis (green spotted puffer) Ciona intestinalis (sea squirt) Nematostella vectensis (sea anemone) Apis mellifera (honey bee) Bombyx mori (silkmoth) Trichoplax adhaerens Arabidopsis thaliana (thale cress) Populus trichocarpa (black cottonwood) Vitis vinifera (wine grape) Oryza sativa japonica (Japanese rice) Physcomitrella patens subsp. patens Ostreococcus lucimarinus Ostreococcus tauri Aspergillus oryzae Escherichia coli K-12 MG1655 Escherichia coli K-12 W3110 Escherichia coli K-12 DH10B Escherichia coli O157 EDL933 (EHEC) Escherichia coli O157 Sakai (EHEC) Escherichia coli O157 EC4115 (EHEC) Escherichia coli CFT073 (UPEC) Escherichia coli UTI89 (UPEC) Escherichia coli 536 (UPEC) Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli HS Escherichia coli SECEC Escherichia coli SE11 Escherichia coli ATCC 8739 Salmonella enterica subsp. enterica serovar Typhi CT18 Salmonella enterica subsp. enterica serovar Typhi Ty2 Salmonella enterica subsp. enterica serovar Paratyphi A Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601 Salmonella enterica subsp. enterica serovar Paratyphi B Salmonella enterica subsp. enterica serovar Choleraesuis Salmonella enterica subsp. enterica serovar Heidelberg Salmonella enterica subsp. enterica serovar Newport Salmonella enterica subsp. enterica serovar Schwarzengrund Salmonella enterica subsp. enterica serovar Agona Salmonella enterica subsp. enterica serovar Dublin Salmonella enterica subsp. enterica serovar Gallinarum Salmonella enterica subsp. enterica serovar Enteritidis Salmonella enterica subsp. arizonae Salmonella typhimurium LT2 Yersinia pestis CO92 Yersinia pestis KIM Yersinia pestis Mediaevails Yersinia pestis Antiqua Yersinia pestis Nepal516 Yersinia pestis Pestoides Yersinia pestis Angola Yersinia pseudotuberculosis IP32953 Yersinia pseudotuberculosis IP31758 Yersinia pseudotuberculosis YPIII Yersinia pseudotuberculosis PB1/+ Yersinia enterocolitica Shigella flexneri 301 (serotype 2a) Shigella flexneri 2457T (serotype 2a) Shigella flexneri 8401 (serotype 5b) Shigella sonnei Shigella boydii Sb227 Shigella boydii CDC 3083-94 Shigella dysenteriae Erwinia carotovora Erwinia tasmaniensis Photorhabdus luminescens Buchnera aphidicola APS Buchnera aphidicola Sg Wigglesworthia glossinidia Sodalis glossinidius Enterobacter sp. 638 Enterobacter sakazakii Klebsiella pneumoniae Klebsiella pneumoniae 342 Citrobacter koseri ATCC BAA-895 Serratia proteamaculans Proteus mirabilis Candidatus Blochmannia floridanus Candidatus Blochmannia pennsylvanicus Haemophilus influenzae Rd KW20 (serotype d) Haemophilus influenzae 86-028NP (nontypeable) Haemophilus influenzae PittEE Haemophilus influenzae PittGG Haemophilus ducreyi Haemophilus somnus 129PT Haemophilus somnus 2336 Pasteurella multocida Mannheimia succiniciproducens Actinobacillus pleuropneumoniae L20 (serotype 5b) Actinobacillus pleuropneumoniae JL03 (serotype 3) Actinobacillus pleuropneumoniae AP76 (serotype 7) Actinobacillus succinogenes Xylella fastidiosa 9a5c Xylella fastidiosa Temecula1 Xylella fastidiosa M12 Xylella fastidiosa M23 Xanthomonas campestris pv. campestris ATCC 33913 Xanthomonas campestris pv. campestris 8004 Xanthomonas campestris pv. campestris B100 Xanthomonas campestris pv. vesicatoria Xanthomonas axonopodis Xanthomonas oryzae KACC10331 Xanthomonas oryzae MAFF311018 Xanthomonas oryzae PXO99A Stenotrophomonas maltophilia Stenotrophomonas maltophilia R551-3 Vibrio cholerae O1 Vibrio cholerae O395 Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Vibrio parahaemolyticus Vibrio fischeri Vibrio fischeri MJ11 Vibrio harveyi Photobacterium profundum Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa UCBPP-PA14 Pseudomonas aeruginosa PA7 Pseudomonas putida KT2440 Pseudomonas putida F1 Pseudomonas putida GB-1 Pseudomonas putida W619 Pseudomonas syringae pv. tomato DC3000 Pseudomonas syringae pv. syringae B728a Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas fluorescens Pf-5 Pseudomonas fluorescens Pf0-1 Pseudomonas entomophila Pseudomonas mendocina Pseudomonas stutzeri Cellvibrio japonicus Psychrobacter arcticum Psychrobacter cryohalolentis Psychrobacter sp. PRwf-1 Acinetobacter sp. ADP1 Acinetobacter baumannii ATCC 17978 Acinetobacter baumannii SDF Acinetobacter baumannii AYE Acinetobacter baumannii ACICU Shewanella oneidensis Shewanella denitrificans Shewanella frigidimarina Shewanella amazonensis Shewanella baltica OS155 Shewanella baltica OS185 Shewanella baltica OS195 Shewanella loihica Shewanella putrefaciens Shewanella sediminis Shewanella pealeana Shewanella sp. MR-4 Shewanella sp. MR-7 Shewanella sp. ANA-3 Shewanella sp. W3-18-1 Shewanella halifaxensis Shewanella woodyi ATCC51908 Idiomarina loihiensis Colwellia psychrerythraea Pseudoalteromonas haloplanktis Pseudoalteromonas atlantica Saccharophagus degradans Marinobacter aquaeolei Alteromonas macleodii Psychromonas ingrahamii Coxiella burnetii RSA 493 Coxiella burnetii RSA 331 Coxiella burnetii Dugway 5J108-111 Coxiella burnetii CbuG_Q212 Coxiella burnetii CbuK_Q154 Legionella pneumophila Philadelphia 1 Legionella pneumophila Lens Legionella pneumophila Paris Legionella pneumophila Corby Methylococcus capsulatus Francisella tularensis subsp. tularensis SCHU S4 Francisella tularensis subsp. tularensis FSC 198 Francisella tularensis subsp. tularensis WY96-3418 Francisella tularensis subsp. holarctica LVS Francisella tularensis subsp. holarctica OSU18 Francisella tularensis subsp. holarctica FTNF002-00 Francisella tularensis subsp. novicida U112 Francisella tularensis subsp. mediasiatica FSC147 Francisella philomiragia Thiomicrospira crunogena Nitrosococcus oceani Alkalilimnicola ehrlichei Halorhodospira halophila Hahella chejuensis Chromohalobacter salexigens Alcanivorax borkumensis Marinomonas sp. MWYL1 Aeromonas hydrophila Aeromonas salmonicida Dichelobacter nodosus Acidithiobacillus ferrooxidans Candidatus Ruthia magnifica Candidatus Vesicomyosocius okutanii Neisseria meningitidis MC58 (serogroup B) Neisseria meningitidis Z2491 (serogroup A) Neisseria meningitidis FAM18 (serogroup C) Neisseria meningitidis 053442 (serogroup C) Neisseria gonorrhoeae Neisseria gonorrhoeae NCCP11945 Chromobacterium violaceum Ralstonia solanacearum Ralstonia pickettii Ralstonia eutropha JMP134 Ralstonia eutropha H16 Ralstonia metallidurans Cupriavidus taiwanensis Burkholderia mallei ATCC 23344 Burkholderia mallei SAVP1 Burkholderia mallei NCTC 10229 Burkholderia mallei NCTC 10247 Burkholderia xenovorans Burkholderia vietnamiensis Burkholderia sp. 383 Burkholderia cenocepacia AU1054 Burkholderia cenocepacia HI2424 Burkholderia cenocepacia MC0-3 Burkholderia cenocepacia J2315 Burkholderia cepacia Burkholderia ambifaria MC40-6 Burkholderia multivorans ATCC 17616 (JGI) Burkholderia multivorans ATCC 17616 (Tohoku) Burkholderia pseudomallei K96243 Burkholderia pseudomallei 1710b Burkholderia pseudomallei 1106a Burkholderia pseudomallei 668 Burkholderia thailandensis Burkholderia phymatum Burkholderia phytofirmans Polynucleobacter sp. QLW-P1DMWA-1 Polynucleobacter necessarius Bordetella pertussis Bordetella parapertussis Bordetella bronchiseptica Bordetella petrii Bordetella avium Rhodoferax ferrireducens Polaromonas sp. JS666 Polaromonas naphthalenivorans Acidovorax avenae Acidovorax sp. JS42 Verminephrobacter eiseniae Delftia acidovorans Methylibium petroleiphilum Herminiimonas arsenicoxydans Minibacterium massiliensis Leptothrix cholodnii Nitrosomonas europaea Nitrosomonas eutropha Nitrosospira multiformis Azoarcus sp. EbN1 Azoarcus sp. BH72 Dechloromonas aromatica Thiobacillus denitrificans Methylobacillus flagellatus Helicobacter pylori 26695 Helicobacter pylori J99 Helicobacter pylori HPAG1 Helicobacter pylori Shi470 Helicobacter pylori G27 Helicobacter pylori P12 Helicobacter hepaticus Helicobacter acinonychis Wolinella succinogenes Thiomicrospira denitrificans Campylobacter jejuni NCTC11168 Campylobacter jejuni RM1221 Campylobacter jejuni 81-176 Campylobacter jejuni 81116 Campylobacter jejuni subsp. doylei 269.97 Campylobacter fetus Campylobacter curvus Campylobacter hominis ATCC BAA-381 Campylobacter concisus 13826 Arcobacter butzleri Nitratiruptor sp. SB155-2 Sulfurovum sp. NBC37-1 Geobacter sulfurreducens Geobacter metallireducens Geobacter uraniumreducens Geobacter lovleyi Geobacter bemidjiensis Pelobacter carbinolicus Pelobacter propionicus Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris DP4 Desulfovibrio desulfuricans Lawsonia intracellularis Bdellovibrio bacteriovorus Desulfotalea psychrophila Candidatus Desulfococcus oleovorans Anaeromyxobacter dehalogenans Anaeromyxobacter sp. Fw109-5 Anaeromyxobacter sp. K Myxococcus xanthus Sorangium cellulosum Syntrophus aciditrophicus Syntrophobacter fumaroxidans Rickettsia prowazekii Rickettsia typhi Rickettsia conorii Rickettsia felis Rickettsia bellii RML369-C Rickettsia bellii OSU 85-389 Rickettsia akari Rickettsia canadensis Rickettsia rickettsii Sheila Smith Rickettsia rickettsii Iowa Rickettsia massiliae Candidatus Pelagibacter ubique Mesorhizobium loti Mesorhizobium sp. BNC1 Parvibaculum lavamentivorans Sinorhizobium meliloti Sinorhizobium medicae Agrobacterium tumefaciens C58 (UWash/Dupont) Agrobacterium tumefaciens C58 (Cereon) Rhizobium etli CFN 42 Rhizobium etli CIAT 652 Rhizobium leguminosarum Rhizobium leguminosarum bv. trifolii WSM2304 Brucella melitensis 16M Brucella melitensis biovar Abortus Brucella abortus 9-941 Brucella abortus S19 Brucella suis 1330 Brucella suis ATCC 23445 Brucella ovis Brucella canis Ochrobactrum anthropi Bradyrhizobium japonicum Bradyrhizobium sp. ORS278 Bradyrhizobium sp. BTAi1 Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris TIE-1 Nitrobacter winogradskyi Nitrobacter hamburgensis Oligotropha carboxidovorans Bartonella henselae Bartonella quintana Bartonella bacilliformis Bartonella tribocorum Xanthobacter autotrophicus Azorhizobium caulinodans Methylobacterium extorquens Methylobacterium radiotolerans Methylobacterium sp. 4-46 Methylobacterium populi Beijerinckia indica Caulobacter crescentus Caulobacter sp. K31 Phenylobacterium zucineum Silicibacter pomeroyi Silicibacter sp. TM1040 Rhodobacter sphaeroides 2.4.1 Rhodobacter sphaeroides ATCC 17029 Rhodobacter sphaeroides ATCC 17025 Jannaschia sp. CCS1 Roseobacter denitrificans Paracoccus denitrificans Dinoroseobacter shibae Maricaulis maris Hyphomonas neptunium Zymomonas mobilis Novosphingobium aromaticivorans Sphingomonas wittichii Gluconobacter oxydans Granulobacter bethesdensis Acidiphilium cryptum JF-5 Gluconacetobacter diazotrophicus Rhodospirillum rubrum Rhodospirillum centenum Magnetospirillum magneticum Magnetococcus sp. MC-1 Acidobacteria bacterium Solibacter usitatus Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis subsp. cremoris MG1363 Clostridium acetobutylicum Thermoanaerobacter tengcongensis Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis F11 Mycobacterium bovis AF2122/97 Mycobacterium bovis BCG Pasteur 1173P2 Mycobacterium avium paratuberculosis Mycobacterium avium 104 Mycobacterium smegmatis Mycobacterium marinum M Nocardia farcinica Rhodococcus sp. RHA1 Clavibacter michiganensis subsp. michiganensis Clavibacter michiganensis subsp. sepedonicus Arthrobacter sp. FB24 Arthrobacter aurescens Frankia alni Salinispora tropica Salinispora arenicola Fusobacterium nucleatum Rhodopirellula baltica Opitutus terrae Methylacidiphilum infernorum Akkermansia muciniphila Chlamydia trachomatis D/UW-3/CX (serovar D) Chlamydia trachomatis A/HAR-13 (serovar A) Chlamydia trachomatis 434/Bu Chlamydia trachomatis L2b/UCH-1/proctitis Chlamydia muridarum Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae AR39 Chlamydophila pneumoniae J138 Chlamydophila pneumoniae TW183 Chlamydophila caviae Chlamydophila abortus Chlamydophila felis Candidatus Protochlamydia amoebophila Leptospira interrogans serovar lai Leptospira interrogans serovar Copenhageni Leptospira borgpetersenii JB197 Leptospira borgpetersenii L550 Leptospira biflexa serovar Patoc Patoc 1 (Paris) Leptospira biflexa serovar Patoc Patoc 1 (Ames) Synechocystis sp. PCC6803 Synechococcus sp. WH8102 Synechococcus elongatus PCC6301 Synechococcus elongatus PCC7942 Synechococcus sp. CC9605 Synechococcus sp. CC9902 Synechococcus sp. CC9311 Synechococcus sp. RCC307 Synechococcus sp. WH7803 Synechococcus sp. PCC7002 Cyanobacteria Yellowstone A-Prime Cyanobacteria Yellowstone B-Prime Thermosynechococcus elongatus Microcystis aeruginosa Cyanothece sp. ATCC 51142 Gloeobacter violaceus Anabaena sp. PCC7120 Nostoc punctiforme Anabaena variabilis Prochlorococcus marinus SS120 Prochlorococcus marinus MED4 Prochlorococcus marinus MIT9313 Prochlorococcus marinus NATL2A Prochlorococcus marinus MIT9312 Prochlorococcus marinus AS9601 Prochlorococcus marinus MIT 9515 Prochlorococcus marinus MIT 9303 Prochlorococcus marinus MIT 9301 Prochlorococcus marinus MIT 9215 Prochlorococcus marinus MIT 9211 Prochlorococcus marinus NATL1A Trichodesmium erythraeum Acaryochloris marina Bacteroides thetaiotaomicron Bacteroides fragilis YCH46 Bacteroides fragilis NCTC9343 Bacteroides vulgatus Porphyromonas gingivalis W83 Porphyromonas gingivalis ATCC 33277 Parabacteroides distasonis Cytophaga hutchinsonii Gramella forsetii Flavobacterium johnsoniae Flavobacterium psychrophilum Candidatus Amoebophilus asiaticus Chlorobaculum tepidum Chlorobaculum parvum NCIB 8327 Chlorobium chlorochromatii Chlorobium phaeobacteroides DSM 266 Chlorobium phaeobacteroides BS1 Chlorobium limicola Prosthecochloris vibrioformis Pelodictyon luteolum Pelodictyon phaeoclathratiforme Chloroherpeton thalassium Prosthecochloris aestuarii Roseiflexus sp. RS-1 Roseiflexus castenholzii DSM13941 Chloroflexus aurantiacus Herpetosiphon aurantiacus Elusimicrobium minutum Uncultured Termite group 1 bacterium phylotype Rs-D17 Aquifex aeolicus Hydrogenobaculum sp. Y04AAS1 Sulfurihydrogenibium sp. YO3AOP1 Dictyoglomus thermophilum Thermodesulfovibrio yellowstonii     Current selection