Phenylalanine, tyrosine and tryptophan biosynthesis - Reference pathway
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Reference pathway
Reference pathway (KO)
Reference pathway (EC)
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Homo sapiens (human)
Pan troglodytes (chimpanzee)
Macaca mulatta (rhesus monkey)
Mus musculus (mouse)
Rattus norvegicus (rat)
Canis familiaris (dog)
Bos taurus (cow)
Sus scrofa (pig)
Equus caballus (horse)
Monodelphis domestica (opossum)
Ornithorhynchus anatinus (platypus)
Gallus gallus (chicken)
Taeniopygia guttata (zebra finch)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Danio rerio (zebrafish)
Branchiostoma floridae (Florida lancelet)
Ciona intestinalis (sea squirt)
Strongylocentrotus purpuratus (purple sea urchin)
Drosophila melanogaster (fruit fly)
Drosophila pseudoobscura pseudoobscura
Drosophila ananassae
Drosophila erecta
Drosophila persimilis
Drosophila sechellia
Drosophila simulans
Drosophila willistoni
Drosophila yakuba
Drosophila grimshawi
Drosophila mojavensis
Anopheles gambiae (mosquito)
Aedes aegypti (yellow fever mosquito)
Culex quinquefasciatus (southern house mosquito)
Apis mellifera (honey bee)
Nasonia vitripennis (jewel wasp)
Tribolium castaneum (red flour beetle)
Acyrthosiphon pisum (pea aphid)
Ixodes scapularis (black-legged tick)
Caenorhabditis elegans (nematode)
Caenorhabditis briggsae
Brugia malayi (filaria)
Schistosoma mansoni
Nematostella vectensis (sea anemone)
Hydra magnipapillata
Trichoplax adhaerens
Arabidopsis thaliana (thale cress)
Populus trichocarpa (black cottonwood)
Ricinus communis (castor bean)
Vitis vinifera (wine grape)
Oryza sativa japonica (Japanese rice)
Sorghum bicolor (sorghum)
Zea mays (maize)
Physcomitrella patens subsp. patens
Chlamydomonas reinhardtii
Ostreococcus lucimarinus
Cyanidioschyzon merolae
Saccharomyces cerevisiae (budding yeast)
Ashbya gossypii (Eremothecium gossypii)
Kluyveromyces lactis
Lachancea thermotolerans
Debaryomyces hansenii
Pichia stipitis
Pichia pastoris
Pichia guilliermondii
Vanderwaltozyma polyspora
Lodderomyces elongisporus
Zygosaccharomyces rouxii
Candida albicans
Candida tropicalis
Candida dubliniensis
Candida glabrata
Yarrowia lipolytica
Clavispora lusitaniae
Schizosaccharomyces pombe (fission yeast)
Neurospora crassa
Podospora anserina
Magnaporthe grisea
Fusarium graminearum
Aspergillus nidulans
Aspergillus fumigatus
Aspergillus oryzae
Aspergillus niger
Aspergillus flavus
Aspergillus clavatus
Penicillium chrysogenum
Neosartorya fischeri
Coccidioides immitis
Uncinocarpus reesii
Sclerotinia sclerotiorum
Botryotinia fuckeliana
Phaeosphaeria nodorum
Cryptococcus neoformans JEC21
Cryptococcus neoformans B-3501A
Postia placenta
Laccaria bicolor
Moniliophthora perniciosa
Ustilago maydis
Malassezia globosa
Monosiga brevicollis
Dictyostelium discoideum (cellular slime mold)
Entamoeba histolytica
Entamoeba dispar
Plasmodium falciparum 3D7
Plasmodium falciparum Dd2
Plasmodium falciparum HB3
Plasmodium yoelii
Plasmodium berghei
Plasmodium knowlesi
Plasmodium vivax
Theileria annulata
Theileria parva
Babesia bovis
Cryptosporidium parvum
Cryptosporidium hominis
Toxoplasma gondii
Tetrahymena thermophila
Paramecium tetraurelia
Trypanosoma brucei
Trypanosoma cruzi
Leishmania major
Leishmania infantum
Leishmania braziliensis
Giardia lamblia
Trichomonas vaginalis
Phaeodactylum tricornutum
Thalassiosira pseudonana
Escherichia coli K-12 MG1655
Escherichia coli K-12 W3110
Escherichia coli K-12 DH10B
Escherichia coli K-12 MC4100(MuLac) BW2952
Escherichia coli O157:H7 EDL933 (EHEC)
Escherichia coli O157:H7 Sakai (EHEC)
Escherichia coli O157:H7 EC4115 (EHEC)
Escherichia coli O157:H7 TW14359 (EHEC)
Escherichia coli O127:H6 (EPEC)
Escherichia coli O6:H1 CFT073 (UPEC)
Escherichia coli UTI89 (UPEC)
Escherichia coli 536 (UPEC)
Escherichia coli O1 (APEC)
Escherichia coli O139:H28 E24377A (ETEC)
Escherichia coli O9 HS (commensal)
Escherichia coli SECEC
Escherichia coli O152:H28 SE11 (commensal)
Escherichia coli ATCC 8739
Escherichia coli 55989 (EAEC)
Escherichia coli ED1a
Escherichia coli IAI1 (commensal)
Escherichia coli O7:K1 IAI39 (ExPEC)
Escherichia coli O45:K1 S88 (ExPEC)
Escherichia coli O17:K52:H18 UMN026 (ExPEC)
Escherichia coli LF82
Escherichia coli BL21
Escherichia coli BL21(DE3)
Escherichia coli B REL606
Escherichia coli O103:H2 12009
Escherichia coli O111:H- 11128
Escherichia coli O26:H11 11368
Escherichia fergusonii
Salmonella enterica subsp. enterica serovar Typhi CT18
Salmonella enterica subsp. enterica serovar Typhi Ty2
Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
Salmonella enterica subsp. enterica serovar Paratyphi B
Salmonella enterica subsp. enterica serovar Paratyphi C
Salmonella enterica subsp. enterica serovar Choleraesuis
Salmonella enterica subsp. enterica serovar Heidelberg
Salmonella enterica subsp. enterica serovar Newport
Salmonella enterica subsp. enterica serovar Schwarzengrund
Salmonella enterica subsp. enterica serovar Agona
Salmonella enterica subsp. enterica serovar Dublin
Salmonella enterica subsp. enterica serovar Gallinarum
Salmonella enterica subsp. enterica serovar Enteritidis
Salmonella enterica subsp. arizonae
Salmonella typhimurium LT2
Yersinia pestis CO92 (biovar Orientalis)
Yersinia pestis KIM (biovar Mediaevalis)
Yersinia pestis Mediaevails (biovar Mediaevalis)
Yersinia pestis Antiqua (biovar Antiqua)
Yersinia pestis Nepal516 (biovar Antiqua)
Yersinia pestis Angola (biovar Antiqua)
Yersinia pestis Pestoides (biovar Microtus)
Yersinia pseudotuberculosis IP32953
Yersinia pseudotuberculosis IP31758
Yersinia pseudotuberculosis YPIII
Yersinia pseudotuberculosis PB1/+
Yersinia enterocolitica
Shigella flexneri 301 (serotype 2a)
Shigella flexneri 2457T (serotype 2a)
Shigella flexneri 8401 (serotype 5b)
Shigella sonnei
Shigella boydii Sb227
Shigella boydii CDC 3083-94
Shigella dysenteriae
Erwinia carotovora
Pectobacterium carotovorum
Pectobacterium wasabiae
Erwinia tasmaniensis
Photorhabdus luminescens
Photorhabdus asymbiotica
Buchnera aphidicola APS
Buchnera aphidicola Sg
Buchnera aphidicola Bp
Buchnera aphidicola Cc
Buchnera aphidicola 5A
Buchnera aphidicola Tuc7
Wigglesworthia glossinidia
Sodalis glossinidius
Enterobacter sp. 638
Enterobacter sakazakii
Cronobacter turicensis
Klebsiella pneumoniae
Klebsiella pneumoniae 342
Klebsiella pneumoniae NTUH-K2044
Klebsiella variicola
Citrobacter koseri ATCC BAA-895
Citrobacter rodentium
Serratia proteamaculans
Proteus mirabilis
Edwardsiella ictaluri
Edwardsiella tarda
Candidatus Blochmannia floridanus
Candidatus Blochmannia pennsylvanicus
Candidatus Hamiltonella defensa
Dickeya dadantii Ech703
Dickeya dadantii Ech586
Dickeya zeae
Haemophilus influenzae Rd KW20 (serotype d)
Haemophilus influenzae 86-028NP (nontypeable)
Haemophilus influenzae PittEE
Haemophilus influenzae PittGG
Haemophilus ducreyi
Haemophilus parasuis
Haemophilus somnus 129PT
Haemophilus somnus 2336
Pasteurella multocida
Mannheimia succiniciproducens
Actinobacillus pleuropneumoniae L20 (serotype 5b)
Actinobacillus pleuropneumoniae JL03 (serotype 3)
Actinobacillus pleuropneumoniae AP76 (serotype 7)
Actinobacillus succinogenes
Aggregatibacter aphrophilus
Aggregatibacter actinomycetemcomitans
Xylella fastidiosa 9a5c
Xylella fastidiosa Temecula1
Xylella fastidiosa M12
Xylella fastidiosa M23
Xanthomonas campestris pv. campestris ATCC 33913
Xanthomonas campestris pv. campestris 8004
Xanthomonas campestris pv. campestris B100
Xanthomonas campestris pv. vesicatoria
Xanthomonas axonopodis
Xanthomonas oryzae KACC10331
Xanthomonas oryzae MAFF311018
Xanthomonas oryzae PXO99A
Xanthomonas albilineans
Stenotrophomonas maltophilia K279a
Stenotrophomonas maltophilia R551-3
Vibrio cholerae O1
Vibrio cholerae O395
Vibrio cholerae M66-2
Vibrio cholerae MJ-1236
Vibrio vulnificus CMCP6
Vibrio vulnificus YJ016
Vibrio parahaemolyticus
Vibrio harveyi
Vibrio splendidus
Vibrio sp. Ex25
Vibrio fischeri
Vibrio fischeri MJ11
Aliivibrio salmonicida LFI1238
Photobacterium profundum
Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa UCBPP-PA14
Pseudomonas aeruginosa PA7
Pseudomonas aeruginosa LESB58
Pseudomonas putida KT2440
Pseudomonas putida F1
Pseudomonas putida GB-1
Pseudomonas putida W619
Pseudomonas syringae pv. tomato DC3000
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. phaseolicola 1448A
Pseudomonas fluorescens Pf-5
Pseudomonas fluorescens Pf0-1
Pseudomonas fluorescens SBW25
Pseudomonas entomophila
Pseudomonas mendocina
Pseudomonas stutzeri
Cellvibrio japonicus
Azotobacter vinelandii
Psychrobacter arcticum
Psychrobacter cryohalolentis
Psychrobacter sp. PRwf-1
Acinetobacter sp. ADP1
Acinetobacter baumannii ATCC 17978
Acinetobacter baumannii SDF
Acinetobacter baumannii AYE
Acinetobacter baumannii ACICU
Acinetobacter baumannii AB0057
Acinetobacter baumannii AB307-0294
Shewanella oneidensis
Shewanella denitrificans
Shewanella frigidimarina
Shewanella amazonensis
Shewanella baltica OS155
Shewanella baltica OS185
Shewanella baltica OS195
Shewanella baltica OS223
Shewanella loihica
Shewanella putrefaciens
Shewanella sediminis
Shewanella pealeana
Shewanella sp. MR-4
Shewanella sp. MR-7
Shewanella sp. ANA-3
Shewanella sp. W3-18-1
Shewanella halifaxensis
Shewanella woodyi ATCC 51908
Shewanella piezotolerans WP3
Idiomarina loihiensis
Colwellia psychrerythraea
Pseudoalteromonas haloplanktis
Pseudoalteromonas atlantica
Saccharophagus degradans
Marinobacter aquaeolei
Alteromonas macleodii
Psychromonas ingrahamii
Teredinibacter turnerae
Coxiella burnetii RSA 493
Coxiella burnetii RSA 331
Coxiella burnetii Dugway 5J108-111
Coxiella burnetii CbuG_Q212
Coxiella burnetii CbuK_Q154
Legionella pneumophila Philadelphia 1
Legionella pneumophila Lens
Legionella pneumophila Paris
Legionella pneumophila Corby
Methylococcus capsulatus
Francisella tularensis subsp. tularensis SCHU S4
Francisella tularensis subsp. tularensis FSC 198
Francisella tularensis subsp. tularensis WY96-3418
Francisella tularensis subsp. holarctica LVS
Francisella tularensis subsp. holarctica OSU18
Francisella tularensis subsp. holarctica FTNF002-00
Francisella tularensis subsp. mediasiatica FSC147
Francisella novicida U112
Francisella philomiragia
Thiomicrospira crunogena
Nitrosococcus oceani
Allochromatium vinosum
Alkalilimnicola ehrlichei
Halorhodospira halophila
Thioalkalivibrio sp. HL-EbGR7
Thioalkalivibrio sp. K90mix
Halothiobacillus neapolitanus
Hahella chejuensis
Chromohalobacter salexigens
Alcanivorax borkumensis
Marinomonas sp. MWYL1
Aeromonas hydrophila
Aeromonas salmonicida
Tolumonas auensis
Dichelobacter nodosus
Acidithiobacillus ferrooxidans ATCC 53993
Acidithiobacillus ferrooxidans ATCC 23270
Baumannia cicadellinicola
Candidatus Carsonella ruddii
Candidatus Ruthia magnifica
Candidatus Vesicomyosocius okutanii
Kangiella koreensis
Neisseria meningitidis Z2491 (serogroup A)
Neisseria meningitidis MC58 (serogroup B)
Neisseria meningitidis FAM18 (serogroup C)
Neisseria meningitidis 053442 (serogroup C)
Neisseria meningitidis alpha14
Neisseria gonorrhoeae FA 1090
Neisseria gonorrhoeae NCCP11945
Chromobacterium violaceum
Laribacter hongkongensis
Ralstonia solanacearum
Ralstonia pickettii 12J
Ralstonia pickettii 12D
Ralstonia eutropha JMP134
Ralstonia eutropha H16
Ralstonia metallidurans
Cupriavidus taiwanensis
Burkholderia mallei ATCC 23344
Burkholderia mallei SAVP1
Burkholderia mallei NCTC 10229
Burkholderia mallei NCTC 10247
Burkholderia pseudomallei K96243
Burkholderia pseudomallei 1710b
Burkholderia pseudomallei 1106a
Burkholderia pseudomallei 668
Burkholderia pseudomallei MSHR346
Burkholderia thailandensis
Burkholderia vietnamiensis
Burkholderia sp. 383
Burkholderia cenocepacia AU1054
Burkholderia cenocepacia HI2424
Burkholderia cenocepacia MC0-3
Burkholderia cenocepacia J2315
Burkholderia cepacia
Burkholderia ambifaria MC40-6
Burkholderia multivorans ATCC 17616 (JGI)
Burkholderia multivorans ATCC 17616 (Tohoku)
Burkholderia xenovorans
Burkholderia phymatum
Burkholderia phytofirmans
Burkholderia glumae
Polynucleobacter sp. QLW-P1DMWA-1
Polynucleobacter necessarius
Bordetella pertussis
Bordetella parapertussis
Bordetella bronchiseptica
Bordetella petrii
Bordetella avium
Rhodoferax ferrireducens
Polaromonas sp. JS666
Polaromonas naphthalenivorans
Acidovorax avenae
Acidovorax sp. JS42
Acidovorax ebreus
Verminephrobacter eiseniae
Delftia acidovorans
Variovorax paradoxus
Comamonas testosteroni
Methylibium petroleiphilum
Herminiimonas arsenicoxydans
Minibacterium massiliensis
Leptothrix cholodnii
Nitrosomonas europaea
Nitrosomonas eutropha
Nitrosospira multiformis
Aromatoleum aromaticum EbN1
Azoarcus sp. BH72
Dechloromonas aromatica
Thauera sp. MZ1T
Thiobacillus denitrificans
Methylobacillus flagellatus
Methylotenera mobilis
Methylovorus sp. SIP3-4
Accumulibacter phosphatis
Helicobacter pylori 26695
Helicobacter pylori J99
Helicobacter pylori HPAG1
Helicobacter pylori Shi470
Helicobacter pylori G27
Helicobacter pylori P12
Helicobacter pylori B38
Helicobacter hepaticus
Helicobacter acinonychis
Wolinella succinogenes
Sulfurimonas denitrificans
Campylobacter jejuni NCTC11168
Campylobacter jejuni RM1221
Campylobacter jejuni 81-176
Campylobacter jejuni 81116
Campylobacter jejuni subsp. doylei 269.97
Campylobacter fetus
Campylobacter curvus
Campylobacter hominis ATCC BAA-381
Campylobacter concisus 13826
Campylobacter lari
Arcobacter butzleri
Sulfurospirillum deleyianum
Nitratiruptor sp. SB155-2
Sulfurovum sp. NBC37-1
Nautilia profundicola
Geobacter sulfurreducens
Geobacter metallireducens
Geobacter uraniumreducens
Geobacter lovleyi
Geobacter bemidjiensis
Geobacter sp. FRC-32
Geobacter sp. M21
Pelobacter carbinolicus
Pelobacter propionicus
Desulfovibrio vulgaris Hildenborough
Desulfovibrio vulgaris DP4
Desulfovibrio vulgaris Miyazaki F
Desulfovibrio desulfuricans G20
Desulfovibrio desulfuricans ATCC 27774
Desulfovibrio magneticus
Desulfovibrio salexigens
Lawsonia intracellularis
Desulfomicrobium baculatum
Desulfohalobium retbaense
Bdellovibrio bacteriovorus
Desulfotalea psychrophila
Desulfococcus oleovorans
Desulfatibacillum alkenivorans
Desulfobacterium autotrophicum
Anaeromyxobacter dehalogenans 2CP-C
Anaeromyxobacter dehalogenans 2CP-1
Anaeromyxobacter sp. Fw109-5
Anaeromyxobacter sp. K
Myxococcus xanthus
Sorangium cellulosum
Haliangium ochraceum
Syntrophus aciditrophicus
Syntrophobacter fumaroxidans
Rickettsia prowazekii
Rickettsia typhi
Rickettsia canadensis
Rickettsia conorii
Rickettsia felis
Rickettsia akari
Rickettsia rickettsii Sheila Smith
Rickettsia rickettsii Iowa
Rickettsia massiliae
Rickettsia peacockii
Rickettsia africae
Rickettsia bellii RML369-C
Rickettsia bellii OSU 85-389
Orientia tsutsugamushi Boryong
Orientia tsutsugamushi Ikeda
Wolbachia wMel
Wolbachia wBm
Wolbachia sp. wRi
Wolbachia pipientis
Anaplasma marginale St. Maries
Anaplasma marginale Florida
Anaplasma centrale
Anaplasma phagocytophilum
Ehrlichia ruminantium Welgevonden (South Africa)
Ehrlichia ruminantium Welgevonden (France)
Ehrlichia ruminantium Gardel
Ehrlichia canis
Ehrlichia chaffeensis
Neorickettsia sennetsu
Neorickettsia risticii
Candidatus Pelagibacter ubique
Mesorhizobium loti
Mesorhizobium sp. BNC1
Parvibaculum lavamentivorans
Sinorhizobium meliloti
Sinorhizobium medicae
Agrobacterium tumefaciens C58
Agrobacterium tumefaciens C58 (Cereon)
Agrobacterium radiobacter K84
Agrobacterium vitis S4
Rhizobium etli CFN 42
Rhizobium etli CIAT 652
Rhizobium leguminosarum
Rhizobium leguminosarum bv. trifolii WSM2304
Rhizobium leguminosarum bv. trifolii WSM1325
Rhizobium sp. NGR234
Candidatus Liberibacter asiaticus
Brucella melitensis 16M
Brucella melitensis biovar Abortus
Brucella abortus 9-941
Brucella abortus S19
Brucella suis 1330
Brucella suis ATCC 23445
Brucella ovis
Brucella canis
Brucella microti
Ochrobactrum anthropi
Bradyrhizobium japonicum
Bradyrhizobium sp. ORS278
Bradyrhizobium sp. BTAi1
Rhodopseudomonas palustris CGA009
Rhodopseudomonas palustris HaA2
Rhodopseudomonas palustris BisB18
Rhodopseudomonas palustris BisB5
Rhodopseudomonas palustris BisA53
Rhodopseudomonas palustris TIE-1
Nitrobacter winogradskyi
Nitrobacter hamburgensis
Oligotropha carboxidovorans
Bartonella henselae
Bartonella quintana
Bartonella bacilliformis
Bartonella tribocorum
Bartonella grahamii
Xanthobacter autotrophicus
Azorhizobium caulinodans
Methylobacterium extorquens
Methylobacterium extorquens AM1
Methylobacterium extorquens DM4
Methylobacterium radiotolerans
Methylobacterium sp. 4-46
Methylobacterium populi
Methylobacterium chloromethanicum
Methylobacterium nodulans
Beijerinckia indica
Methylocella silvestris
Candidatus Hodgkinia cicadicola
Caulobacter crescentus CB15
Caulobacter crescentus NA1000
Caulobacter sp. K31
Phenylobacterium zucineum
Silicibacter pomeroyi
Silicibacter sp. TM1040
Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides ATCC 17029
Rhodobacter sphaeroides ATCC 17025
Rhodobacter sphaeroides KD131
Jannaschia sp. CCS1
Roseobacter denitrificans
Paracoccus denitrificans
Dinoroseobacter shibae
Maricaulis maris
Hyphomonas neptunium
Hirschia baltica
Zymomonas mobilis
Zymomonas mobilis subsp. mobilis NCIMB 11163
Novosphingobium aromaticivorans
Sphingopyxis alaskensis
Sphingomonas wittichii
Erythrobacter litoralis
Gluconobacter oxydans
Granulobacter bethesdensis
Acidiphilium cryptum JF-5
Gluconacetobacter diazotrophicus PAl 5 (Brazil)
Gluconacetobacter diazotrophicus PAl 5 (JGI)
Acetobacter pasteurianus
Rhodospirillum rubrum
Rhodospirillum centenum
Magnetospirillum magneticum
Azospirillum sp. B510
Magnetococcus sp. MC-1
Bacillus subtilis
Bacillus halodurans
Bacillus anthracis Ames
Bacillus anthracis Ames 0581
Bacillus anthracis A2012
Bacillus anthracis Sterne
Bacillus anthracis CDC 684
Bacillus anthracis A0248
Bacillus cereus ATCC 14579
Bacillus cereus ATCC 10987
Bacillus cereus ZK
Bacillus cereus AH187
Bacillus cereus B4264
Bacillus cereus AH820
Bacillus cereus G9842
Bacillus cereus Q1
Bacillus cereus 03BB102
Bacillus cytotoxis NVH 391-98
Bacillus thuringiensis 97-27
Bacillus thuringiensis Al Hakam
Bacillus weihenstephanensis
Bacillus licheniformis ATCC 14580
Bacillus licheniformis DSM13
Bacillus clausii
Bacillus amyloliquefaciens
Bacillus pumilus
Bacillus pseudofirmus
Oceanobacillus iheyensis
Geobacillus kaustophilus
Geobacillus thermodenitrificans
Geobacillus sp. WCH70
Geobacillus sp. Y412MC10
Geobacillus sp. Y412MC61
Anoxybacillus flavithermus
Staphylococcus aureus N315
Staphylococcus aureus Mu50
Staphylococcus aureus Mu3
Staphylococcus aureus MW2
Staphylococcus aureus MRSA252
Staphylococcus aureus MSSA476
Staphylococcus aureus COL
Staphylococcus aureus RF122
Staphylococcus aureus USA300
Staphylococcus aureus USA300 TCH1516
Staphylococcus aureus NCTC8325
Staphylococcus aureus JH9
Staphylococcus aureus JH1
Staphylococcus aureus Newman
Staphylococcus aureus ED98
Staphylococcus epidermidis ATCC 12228
Staphylococcus epidermidis RP62A
Staphylococcus haemolyticus
Staphylococcus saprophyticus
Staphylococcus carnosus
Listeria monocytogenes EGD-e
Listeria monocytogenes F2365
Listeria monocytogenes HCC23
Listeria monocytogenes Clip81459
Listeria monocytogenes 08-5578
Listeria monocytogenes 08-5923
Listeria innocua
Listeria welshimeri SLCC5334
Lysinibacillus sphaericus
Exiguobacterium sibiricum
Exiguobacterium sp. AT1b
Macrococcus caseolyticus
Brevibacillus brevis
Paenibacillus sp. JDR-2
Alicyclobacillus acidocaldarius
Lactococcus lactis subsp. lactis IL1403
Lactococcus lactis subsp. lactis KF147
Lactococcus lactis subsp. cremoris SK11
Lactococcus lactis subsp. cremoris MG1363
Streptococcus pyogenes SF370 (serotype M1)
Streptococcus pyogenes MGAS5005 (serotype M1)
Streptococcus pyogenes MGAS8232 (serotype M18)
Streptococcus pyogenes MGAS315 (serotype M3)
Streptococcus pyogenes SSI-1 (serotype M3)
Streptococcus pyogenes MGAS10270 (serotype M2)
Streptococcus pyogenes MGAS10750 (serotype M4)
Streptococcus pyogenes MGAS2096 (serotype M12)
Streptococcus pyogenes MGAS9429 (serotype M12)
Streptococcus pyogenes Manfredo (serotype M5)
Streptococcus pyogenes MGAS10394 (serotype M6)
Streptococcus pyogenes MGAS6180 (serotype M28)
Streptococcus pyogenes NZ131 (serotype M49)
Streptococcus pneumoniae TIGR4 (virulent serotype 4)
Streptococcus pneumoniae D39 (virulent serotype 2)
Streptococcus pneumoniae R6 (avirulent)
Streptococcus pneumoniae CGSP14 (serotype 14)
Streptococcus pneumoniae G54 (serotype 19F)
Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage)
Streptococcus pneumoniae Hungary19A 6
Streptococcus pneumoniae 70585
Streptococcus pneumoniae JJA
Streptococcus pneumoniae P1031
Streptococcus pneumoniae Taiwan19F-14
Streptococcus agalactiae 2603 (serotype V)
Streptococcus agalactiae NEM316 (serotype III)
Streptococcus agalactiae A909 (serotype Ia)
Streptococcus mutans UA159
Streptococcus thermophilus CNRZ1066
Streptococcus thermophilus LMG18311
Streptococcus thermophilus LMD-9
Streptococcus sanguinis
Streptococcus suis 05ZYH33
Streptococcus suis 98HAH33
Streptococcus suis BM407
Streptococcus suis P1/7
Streptococcus suis SC84
Streptococcus gordonii
Streptococcus equi subsp. zooepidemicus H70
Streptococcus equi subsp. zooepidemicus MGCS10565
Streptococcus equi subsp. equi 4047
Streptococcus uberis
Streptococcus dysgalactiae
Streptococcus gallolyticus
Streptococcus mitis B6
Lactobacillus plantarum WCFS1
Lactobacillus plantarum JDM1
Lactobacillus sakei
Lactobacillus salivarius
Lactobacillus delbrueckii ATCC 11842
Lactobacillus casei ATCC 334
Lactobacillus casei BL23
Lactobacillus fermentum
Lactobacillus rhamnosus
Lactobacillus rhamnosus Lc 705
Enterococcus faecalis
Oenococcus oeni
Leuconostoc mesenteroides
Leuconostoc citreum
Clostridium acetobutylicum
Clostridium perfringens 13
Clostridium perfringens ATCC 13124
Clostridium perfringens SM101
Clostridium tetani E88
Clostridium novyi
Clostridium thermocellum
Clostridium difficile 630
Clostridium difficile CD196
Clostridium difficile R20291
Clostridium botulinum A ATCC 3502
Clostridium botulinum A ATCC 19397
Clostridium botulinum A Hall
Clostridium botulinum A2
Clostridium botulinum A3 Loch Maree
Clostridium botulinum B Eklund 17B
Clostridium botulinum B1 Okra
Clostridium botulinum Ba4
Clostridium botulinum E3
Clostridium botulinum F Langeland
Clostridium beijerinckii
Clostridium kluyveri DSM 555
Clostridium kluyveri NBRC 12016
Clostridium phytofermentans
Clostridium cellulolyticum
Alkaliphilus metalliredigens
Alkaliphilus oremlandii
Symbiobacterium thermophilum
Syntrophomonas wolfei
Veillonella parvula
Acidaminococcus fermentans
Anaerocellum thermophilum
Desulfitobacterium hafniense Y51
Desulfitobacterium hafniense DCB-2
Desulfotomaculum reducens
Desulfotomaculum acetoxidans
Pelotomaculum thermopropionicum
Candidatus Desulforudis audaxviator
Heliobacterium modesticaldum
Finegoldia magna
Anaerococcus prevotii
Eubacterium eligens
Eubacterium rectale
Thermoanaerobacter tengcongensis
Thermoanaerobacter sp. X514
Thermoanaerobacter pseudethanolicus
Carboxydothermus hydrogenoformans
Moorella thermoacetica
Ammonifex degensii
Caldicellulosiruptor saccharolyticus
Coprothermobacter proteolyticus
Natranaerobius thermophilus
Halothermothrix orenii
Acholeplasma laidlawii
Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis H37Ra
Mycobacterium tuberculosis F11
Mycobacterium tuberculosis KZN 1435
Mycobacterium bovis AF2122/97
Mycobacterium bovis BCG Pasteur 1173P2
Mycobacterium bovis BCG Tokyo 172
Mycobacterium leprae TN
Mycobacterium leprae Br4923
Mycobacterium avium paratuberculosis
Mycobacterium avium 104
Mycobacterium smegmatis
Mycobacterium ulcerans
Mycobacterium vanbaalenii
Mycobacterium gilvum
Mycobacterium abscessus ATCC 19977
Mycobacterium sp. MCS
Mycobacterium sp. KMS
Mycobacterium sp. JLS
Mycobacterium marinum M
Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko)
Corynebacterium glutamicum ATCC 13032 (Bielefeld)
Corynebacterium glutamicum R
Corynebacterium efficiens
Corynebacterium diphtheriae
Corynebacterium jeikeium
Corynebacterium urealyticum
Corynebacterium aurimucosum
Corynebacterium kroppenstedtii
Nocardia farcinica
Rhodococcus sp. RHA1
Rhodococcus erythropolis
Rhodococcus opacus
Gordonia bronchialis
Streptomyces coelicolor
Streptomyces avermitilis
Streptomyces griseus
Tropheryma whipplei Twist
Tropheryma whipplei TW08/27
Leifsonia xyli xyli CTCB07
Clavibacter michiganensis subsp. michiganensis
Clavibacter michiganensis subsp. sepedonicus
Arthrobacter sp. FB24
Arthrobacter aurescens
Arthrobacter chlorophenolicus
Renibacterium salmoninarum
Kocuria rhizophila
Micrococcus luteus
Rothia mucilaginosa
Beutenbergia cavernae
Brachybacterium faecium
Jonesia denitrificans
Kytococcus sedentarius
Xylanimonas cellulosilytica
Propionibacterium acnes
Nocardioides sp. JS614
Kribbella flavida
Thermobifida fusca
Thermomonospora curvata
Streptosporangium roseum
Frankia sp. CcI3
Frankia sp. EAN1pec
Frankia alni
Acidothermus cellulolyticus
Nakamurella multipartita
Geodermatophilus obscurus
Kineococcus radiotolerans
Saccharopolyspora erythraea
Saccharomonospora viridis
Actinosynnema mirum
Salinispora tropica
Salinispora arenicola
Catenulispora acidiphila
Bifidobacterium longum NCC2705
Bifidobacterium longum DJO10A
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium adolescentis
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium animalis subsp. lactis Bl-04
Bifidobacterium animalis subsp. lactis DSM 10140
Bifidobacterium dentium
Gardnerella vaginalis
Rubrobacter xylanophilus
Conexibacter woesei
Acidimicrobium ferrooxidans DSM 10331
Cryptobacterium curtum
Slackia heliotrinireducens
Atopobium parvulum
Eggerthella lenta
Chlamydia trachomatis D/UW-3/CX (serovar D)
Chlamydia trachomatis A/HAR-13 (serovar A)
Chlamydia trachomatis 434/Bu
Chlamydia trachomatis L2b/UCH-1/proctitis
Chlamydia trachomatis B/Jali20/OT
Chlamydia muridarum
Chlamydophila pneumoniae CWL029
Chlamydophila pneumoniae AR39
Chlamydophila pneumoniae J138
Chlamydophila pneumoniae TW183
Chlamydophila caviae
Chlamydophila abortus
Chlamydophila felis
Candidatus Protochlamydia amoebophila
Treponema pallidum subsp. pallidum Nichols
Treponema denticola
Leptospira interrogans serovar lai
Leptospira interrogans serovar Copenhageni
Leptospira borgpetersenii JB197
Leptospira borgpetersenii L550
Leptospira biflexa serovar Patoc Patoc 1 (Paris)
Leptospira biflexa serovar Patoc Patoc 1 (Ames)
Brachyspira hyodysenteriae
Acidobacteria bacterium
Acidobacterium capsulatum
Solibacter usitatus
Bacteroides thetaiotaomicron
Bacteroides fragilis YCH46
Bacteroides fragilis NCTC9343
Bacteroides vulgatus
Porphyromonas gingivalis W83
Porphyromonas gingivalis ATCC 33277
Parabacteroides distasonis
Candidatus Azobacteroides pseudotrichonymphae
Salinibacter ruber
Rhodothermus marinus
Cytophaga hutchinsonii
Dyadobacter fermentans
Spirosoma linguale
Chitinophaga pinensis
Pedobacter heparinus
Gramella forsetii
Flavobacterium johnsoniae
Flavobacterium psychrophilum
Flavobacteriaceae bacterium
Capnocytophaga ochracea
Robiginitalea biformata
Candidatus Sulcia muelleri GWSS
Candidatus Sulcia muelleri SMDSEM
Blattabacterium sp. (Blattella germanica)
Blattabacterium sp. (Periplaneta americana)
Candidatus Amoebophilus asiaticus
Fibrobacter succinogenes
Fusobacterium nucleatum
Leptotrichia buccalis
Sebaldella termitidis
Streptobacillus moniliformis
Opitutus terrae
Methylacidiphilum infernorum
Akkermansia muciniphila
Gemmatimonas aurantiaca
Rhodopirellula baltica
Pirellula staleyi
Elusimicrobium minutum
Uncultured Termite group 1 bacterium phylotype Rs-D17
Thermanaerovibrio acidaminovorans
Synechocystis sp. PCC6803
Synechococcus sp. WH8102
Synechococcus elongatus PCC6301
Synechococcus elongatus PCC7942
Synechococcus sp. CC9605
Synechococcus sp. CC9902
Synechococcus sp. CC9311
Synechococcus sp. RCC307
Synechococcus sp. WH7803
Synechococcus sp. PCC7002
Cyanobacteria Yellowstone A-Prime
Cyanobacteria Yellowstone B-Prime
Thermosynechococcus elongatus
Microcystis aeruginosa
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 7424
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 8802
Cyanobacterium UCYN-A
Gloeobacter violaceus
Anabaena sp. PCC7120
Nostoc punctiforme
Anabaena variabilis
Prochlorococcus marinus SS120
Prochlorococcus marinus MED4
Prochlorococcus marinus MIT 9313
Prochlorococcus marinus NATL2A
Prochlorococcus marinus MIT9312
Prochlorococcus marinus AS9601
Prochlorococcus marinus MIT 9515
Prochlorococcus marinus MIT 9303
Prochlorococcus marinus MIT 9301
Prochlorococcus marinus MIT 9215
Prochlorococcus marinus MIT 9211
Prochlorococcus marinus NATL1A
Trichodesmium erythraeum
Acaryochloris marina
Chlorobaculum tepidum
Chlorobaculum parvum NCIB 8327
Chlorobium chlorochromatii
Chlorobium phaeobacteroides DSM 266
Chlorobium phaeobacteroides BS1
Chlorobium limicola
Chlorobium vibrioformis
Pelodictyon luteolum
Pelodictyon phaeoclathratiforme
Prosthecochloris aestuarii
Chloroherpeton thalassium
Dehalococcoides ethenogenes
Dehalococcoides sp. CBDB1
Dehalococcoides sp. BAV1
Dehalococcoides sp. VS
Roseiflexus sp. RS-1
Roseiflexus castenholzii DSM13941
Chloroflexus aurantiacus
Chloroflexus aggregans
Chloroflexus sp. Y-400-fl
Herpetosiphon aurantiacus
Thermomicrobium roseum
Sphaerobacter thermophilus
Deinococcus radiodurans
Deinococcus geothermalis
Deinococcus deserti
Thermus thermophilus HB27
Thermus thermophilus HB8
Aquifex aeolicus
Hydrogenobaculum sp. Y04AAS1
Hydrogenobacter thermophilus
Sulfurihydrogenibium sp. YO3AOP1
Sulfurihydrogenibium azorense
Persephonella marina
Thermotoga maritima
Thermotoga petrophila
Thermotoga lettingae
Thermotoga sp. RQ2
Thermotoga neapolitana
Thermotoga naphthophila
Thermosipho melanesiensis
Thermosipho africanus
Fervidobacterium nodosum
Petrotoga mobilis
Kosmotoga olearia
Dictyoglomus thermophilum
Dictyoglomus turgidum
Thermodesulfovibrio yellowstonii
Thermobaculum terrenum
Methanococcus jannaschii
Methanocaldococcus fervens
Methanocaldococcus vulcanius
Methanococcus maripaludis S2
Methanococcus maripaludis C5
Methanococcus maripaludis C6
Methanococcus maripaludis C7
Methanococcus aeolicus
Methanococcus vannielii
Methanosarcina acetivorans
Methanosarcina barkeri
Methanosarcina mazei
Methanococcoides burtonii
Methanosaeta thermophila
Methanospirillum hungatei
Methanocorpusculum labreanum
Methanoculleus marisnigri
Candidatus Methanoregula boonei
Candidatus Methanosphaerula palustris
Methanocella paludicola
Methanobacterium thermoautotrophicum
Methanosphaera stadtmanae
Methanobrevibacter smithii ATCC 35061
Methanobrevibacter ruminantium
Methanopyrus kandleri
Archaeoglobus fulgidus
Archaeoglobus profundus
Ferroglobus placidus
Halobacterium sp. NRC-1
Halobacterium salinarum R1
Haloarcula marismortui
Haloquadratum walsbyi
Natronomonas pharaonis
Halorubrum lacusprofundi
Halorhabdus utahensis
Halomicrobium mukohataei
Haloterrigena turkmenica
Thermoplasma acidophilum
Thermoplasma volcanium
Picrophilus torridus
Pyrococcus horikoshii
Pyrococcus abyssi
Pyrococcus furiosus
Thermococcus kodakaraensis
Thermococcus onnurineus
Thermococcus gammatolerans
Thermococcus sibiricus
Uncultured methanogenic archaeon RC-I
Aeropyrum pernix
Staphylothermus marinus
Ignicoccus hospitalis
Desulfurococcus kamchatkensis
Hyperthermus butylicus
Sulfolobus solfataricus
Sulfolobus tokodaii
Sulfolobus acidocaldarius
Sulfolobus islandicus L.S.2.15
Sulfolobus islandicus M.14.25
Sulfolobus islandicus M.16.27
Sulfolobus islandicus M.16.4
Sulfolobus islandicus Y.G.57.14
Sulfolobus islandicus Y.N.15.51
Sulfolobus islandicus L.D.8.5
Metallosphaera sedula
Pyrobaculum aerophilum
Pyrobaculum islandicum
Pyrobaculum calidifontis
Pyrobaculum arsenaticum
Caldivirga maquilingensis
Thermoproteus neutrophilus
Thermofilum pendens
Nitrosopumilus maritimus
Nanoarchaeum equitans
Candidatus Korarchaeum cryptofilum
Phenylalanine, tyrosine and tryptophan biosynthesis - Reference pathway
Phenylalanine, tyrosine and tryptophan biosynthesis - Reference pathway
