Benzoate degradation via hydroxylation - Reference pathway

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Reference pathway (KO) Reference pathway (EC) Reference pathway (Reaction) -----< Sort below by alphabet >----- Canis familiaris (dog) Danio rerio (zebrafish) Fugu rubripes (Japanese puffer fish) Oryzias latipes (Japanese medaka) Ciona intestinalis (sea squirt) Drosophila melanogaster (fruit fly) Drosophila pseudoobscura Drosophila ananassae Drosophila erecta Drosophila persimilis Drosophila sechellia Drosophila simulans Drosophila willistoni Drosophila yakuba Drosophila grimshawi Drosophila mojavensis Drosophila virilis Anopheles gambiae (mosquito) Aedes aegypti (yellow fever mosquito) Apis mellifera (honey bee) Trichoplax adhaerens Arabidopsis thaliana (thale cress) Populus trichocarpa (black cottonwood) Vitis vinifera (wine grape) Oryza sativa japonica (Japanese rice) Physcomitrella patens subsp. patens Chlamydomonas reinhardtii Saccharomyces cerevisiae Saccharomyces paradoxus Saccharomyces mikatae Saccharomyces bayanus Ashbya gossypii (Eremothecium gossypii) Kluyveromyces lactis Kluyveromyces waltii Debaryomyces hansenii Pichia stipitis Vanderwaltozyma polyspora Candida albicans Candida glabrata Yarrowia lipolytica Schizosaccharomyces pombe Neurospora crassa Podospora anserina Magnaporthe grisea Fusarium graminearum Aspergillus nidulans Aspergillus fumigatus Aspergillus oryzae Aspergillus niger Neosartorya fischeri Sclerotinia sclerotiorum Botryotinia fuckeliana Cryptococcus neoformans JEC21 Cryptococcus neoformans B-3501A Phanerochaete chrysosporium Laccaria bicolor Ustilago maydis Malassezia globosa Monosiga brevicollis Tetrahymena thermophila Leishmania major Escherichia coli K-12 MG1655 Escherichia coli K-12 W3110 Escherichia coli K-12 DH10B Escherichia coli O157 EDL933 (EHEC) Escherichia coli O157 Sakai (EHEC) Escherichia coli O157 EC4115 (EHEC) Escherichia coli E24377A Escherichia coli HS Escherichia coli SECEC Escherichia coli SE11 Escherichia coli ATCC 8739 Salmonella enterica subsp. enterica serovar Typhi CT18 Salmonella enterica subsp. enterica serovar Typhi Ty2 Salmonella enterica subsp. enterica serovar Paratyphi A Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601 Salmonella enterica subsp. enterica serovar Paratyphi B Salmonella enterica subsp. enterica serovar Choleraesuis Salmonella enterica subsp. enterica serovar Heidelberg Salmonella enterica subsp. enterica serovar Newport Salmonella enterica subsp. enterica serovar Schwarzengrund Salmonella enterica subsp. enterica serovar Agona Salmonella enterica subsp. enterica serovar Dublin Salmonella enterica subsp. enterica serovar Gallinarum Salmonella enterica subsp. enterica serovar Enteritidis Salmonella enterica subsp. arizonae Salmonella typhimurium LT2 Yersinia pestis CO92 Yersinia pestis KIM Yersinia pestis Mediaevails Yersinia pestis Antiqua Yersinia pestis Nepal516 Yersinia pestis Pestoides Yersinia pestis Angola Yersinia pseudotuberculosis IP32953 Yersinia pseudotuberculosis IP31758 Yersinia pseudotuberculosis YPIII Yersinia pseudotuberculosis PB1/+ Yersinia enterocolitica Shigella flexneri 301 (serotype 2a) Shigella flexneri 2457T (serotype 2a) Shigella flexneri 8401 (serotype 5b) Shigella sonnei Shigella boydii Sb227 Shigella boydii CDC 3083-94 Erwinia carotovora Erwinia tasmaniensis Photorhabdus luminescens Enterobacter sp. 638 Enterobacter sakazakii Klebsiella pneumoniae Klebsiella pneumoniae 342 Citrobacter koseri ATCC BAA-895 Serratia proteamaculans Proteus mirabilis Haemophilus somnus 2336 Pasteurella multocida Mannheimia succiniciproducens Actinobacillus pleuropneumoniae L20 (serotype 5b) Actinobacillus pleuropneumoniae JL03 (serotype 3) Actinobacillus pleuropneumoniae AP76 (serotype 7) Actinobacillus succinogenes Xanthomonas campestris pv. campestris ATCC 33913 Xanthomonas campestris pv. campestris 8004 Xanthomonas campestris pv. campestris B100 Xanthomonas campestris pv. vesicatoria Xanthomonas axonopodis Xanthomonas oryzae KACC10331 Xanthomonas oryzae MAFF311018 Xanthomonas oryzae PXO99A Stenotrophomonas maltophilia Stenotrophomonas maltophilia R551-3 Vibrio cholerae O1 Vibrio cholerae O395 Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Vibrio parahaemolyticus Vibrio fischeri Vibrio fischeri MJ11 Vibrio harveyi Photobacterium profundum Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa UCBPP-PA14 Pseudomonas aeruginosa PA7 Pseudomonas putida KT2440 Pseudomonas putida F1 Pseudomonas putida GB-1 Pseudomonas putida W619 Pseudomonas syringae pv. tomato DC3000 Pseudomonas syringae pv. syringae B728a Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas fluorescens Pf-5 Pseudomonas fluorescens Pf0-1 Pseudomonas entomophila Pseudomonas mendocina Pseudomonas stutzeri Cellvibrio japonicus Psychrobacter arcticum Psychrobacter cryohalolentis Psychrobacter sp. PRwf-1 Acinetobacter sp. ADP1 Acinetobacter baumannii ATCC 17978 Acinetobacter baumannii SDF Acinetobacter baumannii AYE Acinetobacter baumannii ACICU Shewanella oneidensis Shewanella denitrificans Shewanella frigidimarina Shewanella amazonensis Shewanella baltica OS155 Shewanella baltica OS185 Shewanella baltica OS195 Shewanella loihica Shewanella sediminis Shewanella pealeana Shewanella sp. MR-4 Shewanella sp. MR-7 Shewanella sp. ANA-3 Shewanella halifaxensis Shewanella woodyi ATCC51908 Idiomarina loihiensis Colwellia psychrerythraea Pseudoalteromonas haloplanktis Pseudoalteromonas atlantica Saccharophagus degradans Marinobacter aquaeolei Alteromonas macleodii Psychromonas ingrahamii Coxiella burnetii RSA 493 Legionella pneumophila Philadelphia 1 Legionella pneumophila Lens Legionella pneumophila Paris Legionella pneumophila Corby Francisella tularensis subsp. tularensis SCHU S4 Francisella tularensis subsp. tularensis FSC 198 Francisella tularensis subsp. tularensis WY96-3418 Francisella tularensis subsp. holarctica LVS Francisella tularensis subsp. holarctica OSU18 Francisella tularensis subsp. holarctica FTNF002-00 Francisella tularensis subsp. mediasiatica FSC147 Francisella philomiragia Nitrosococcus oceani Alkalilimnicola ehrlichei Hahella chejuensis Chromohalobacter salexigens Alcanivorax borkumensis Marinomonas sp. MWYL1 Chromobacterium violaceum Ralstonia solanacearum Ralstonia pickettii Ralstonia eutropha JMP134 Ralstonia eutropha H16 Ralstonia metallidurans Cupriavidus taiwanensis Burkholderia mallei ATCC 23344 Burkholderia mallei SAVP1 Burkholderia mallei NCTC 10229 Burkholderia mallei NCTC 10247 Burkholderia xenovorans Burkholderia vietnamiensis Burkholderia sp. 383 Burkholderia cenocepacia AU1054 Burkholderia cenocepacia HI2424 Burkholderia cenocepacia MC0-3 Burkholderia cenocepacia J2315 Burkholderia cepacia Burkholderia ambifaria MC40-6 Burkholderia multivorans ATCC 17616 (JGI) Burkholderia multivorans ATCC 17616 (Tohoku) Burkholderia pseudomallei K96243 Burkholderia pseudomallei 1710b Burkholderia pseudomallei 1106a Burkholderia pseudomallei 668 Burkholderia thailandensis Burkholderia phymatum Burkholderia phytofirmans Polynucleobacter sp. QLW-P1DMWA-1 Polynucleobacter necessarius Bordetella pertussis Bordetella parapertussis Bordetella bronchiseptica Bordetella petrii Bordetella avium Rhodoferax ferrireducens Polaromonas sp. JS666 Polaromonas naphthalenivorans Acidovorax avenae Acidovorax sp. JS42 Verminephrobacter eiseniae Delftia acidovorans Methylibium petroleiphilum Herminiimonas arsenicoxydans Minibacterium massiliensis Leptothrix cholodnii Nitrosospira multiformis Azoarcus sp. EbN1 Azoarcus sp. BH72 Dechloromonas aromatica Helicobacter pylori 26695 Helicobacter pylori J99 Helicobacter pylori HPAG1 Helicobacter pylori Shi470 Helicobacter pylori G27 Helicobacter pylori P12 Helicobacter hepaticus Helicobacter acinonychis Wolinella succinogenes Campylobacter jejuni NCTC11168 Campylobacter jejuni RM1221 Campylobacter jejuni 81-176 Campylobacter jejuni 81116 Campylobacter jejuni subsp. doylei 269.97 Campylobacter fetus Campylobacter curvus Campylobacter concisus 13826 Arcobacter butzleri Sulfurovum sp. NBC37-1 Geobacter sulfurreducens Geobacter metallireducens Geobacter uraniumreducens Geobacter lovleyi Geobacter bemidjiensis Pelobacter carbinolicus Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris DP4 Desulfovibrio desulfuricans Bdellovibrio bacteriovorus Candidatus Desulfococcus oleovorans Anaeromyxobacter dehalogenans Anaeromyxobacter sp. Fw109-5 Anaeromyxobacter sp. K Myxococcus xanthus Sorangium cellulosum Syntrophus aciditrophicus Syntrophobacter fumaroxidans Rickettsia typhi Rickettsia conorii Rickettsia felis Rickettsia bellii RML369-C Rickettsia canadensis Wolbachia wBm Wolbachia pipientis Candidatus Pelagibacter ubique Mesorhizobium loti Mesorhizobium sp. BNC1 Parvibaculum lavamentivorans Sinorhizobium meliloti Sinorhizobium medicae Agrobacterium tumefaciens C58 (UWash/Dupont) Agrobacterium tumefaciens C58 (Cereon) Rhizobium etli CFN 42 Rhizobium etli CIAT 652 Rhizobium leguminosarum Rhizobium leguminosarum bv. trifolii WSM2304 Brucella melitensis 16M Brucella melitensis biovar Abortus Brucella abortus 9-941 Brucella abortus S19 Brucella suis 1330 Brucella suis ATCC 23445 Brucella ovis Brucella canis Ochrobactrum anthropi Bradyrhizobium japonicum Bradyrhizobium sp. ORS278 Bradyrhizobium sp. BTAi1 Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris TIE-1 Nitrobacter winogradskyi Nitrobacter hamburgensis Oligotropha carboxidovorans Bartonella tribocorum Xanthobacter autotrophicus Azorhizobium caulinodans Methylobacterium extorquens Methylobacterium radiotolerans Methylobacterium sp. 4-46 Methylobacterium populi Beijerinckia indica Caulobacter crescentus Caulobacter sp. K31 Phenylobacterium zucineum Silicibacter pomeroyi Silicibacter sp. TM1040 Rhodobacter sphaeroides 2.4.1 Rhodobacter sphaeroides ATCC 17029 Rhodobacter sphaeroides ATCC 17025 Jannaschia sp. CCS1 Roseobacter denitrificans Paracoccus denitrificans Dinoroseobacter shibae Maricaulis maris Hyphomonas neptunium Zymomonas mobilis Novosphingobium aromaticivorans Sphingopyxis alaskensis Sphingomonas wittichii Erythrobacter litoralis Granulobacter bethesdensis Acidiphilium cryptum JF-5 Gluconacetobacter diazotrophicus Rhodospirillum rubrum Rhodospirillum centenum Magnetospirillum magneticum Magnetococcus sp. MC-1 Acidobacteria bacterium Solibacter usitatus Bacillus subtilis Bacillus halodurans Bacillus anthracis Ames Bacillus anthracis Ames 0581 Bacillus anthracis A2012 Bacillus anthracis Sterne Bacillus cereus ATCC 14579 Bacillus cereus ATCC 10987 Bacillus cereus ZK Bacillus cereus subsp. cytotoxis NVH 391-98 Bacillus thuringiensis 97-27 Bacillus thuringiensis Al Hakam Bacillus weihenstephanensis Bacillus licheniformis ATCC 14580 Bacillus licheniformis DSM13 Bacillus clausii Bacillus amyloliquefaciens Bacillus pumilus Oceanobacillus iheyensis Geobacillus kaustophilus Geobacillus thermodenitrificans Lysinibacillus sphaericus Exiguobacterium sibiricum Staphylococcus aureus N315 Staphylococcus aureus Mu50 Staphylococcus aureus Mu3 Staphylococcus aureus MW2 Staphylococcus aureus MRSA252 Staphylococcus aureus MSSA476 Staphylococcus aureus COL Staphylococcus aureus USA300 Staphylococcus aureus USA300 TCH1516 Staphylococcus aureus NCTC8325 Staphylococcus aureus JH9 Staphylococcus aureus JH1 Staphylococcus aureus Newman Staphylococcus saprophyticus Listeria welshimeri SLCC5334 Lactococcus lactis subsp. lactis IL1403 Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis subsp. cremoris MG1363 Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae R6 Streptococcus pneumoniae D39 Streptococcus pneumoniae G54 Streptococcus sanguinis Lactobacillus plantarum Lactobacillus sakei Lactobacillus salivarius Lactobacillus brevis Lactobacillus casei ATCC 334 Lactobacillus casei BL23 Lactobacillus reuteri F275 (JGI) Lactobacillus reuteri F275 (Kitasato) Lactobacillus fermentum Symbiobacterium thermophilum Clostridium tetani E88 Clostridium novyi Clostridium difficile Clostridium botulinum A ATCC 3502 Clostridium botulinum A ATCC 19397 Clostridium botulinum A Hall Clostridium botulinum A3 Loch Maree Clostridium botulinum B Eklund 17B Clostridium botulinum B1 Okra Clostridium botulinum E3 Clostridium botulinum F Langeland Clostridium beijerinckii Alkaliphilus oremlandii Carboxydothermus hydrogenoformans Desulfitobacterium hafniense Pelotomaculum thermopropionicum Candidatus Desulforudis audaxviator Moorella thermoacetica Acholeplasma laidlawii Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis F11 Mycobacterium bovis AF2122/97 Mycobacterium bovis BCG Pasteur 1173P2 Mycobacterium avium paratuberculosis Mycobacterium avium 104 Mycobacterium smegmatis Mycobacterium ulcerans Mycobacterium vanbaalenii Mycobacterium gilvum Mycobacterium abscessus ATCC 19977T Mycobacterium sp. MCS Mycobacterium sp. KMS Mycobacterium sp. JLS Mycobacterium marinum M Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) Corynebacterium glutamicum ATCC 13032 (Bielefeld) Corynebacterium glutamicum R Corynebacterium efficiens Corynebacterium urealyticum Nocardia farcinica Rhodococcus sp. RHA1 Streptomyces coelicolor Streptomyces avermitilis Streptomyces griseus Clavibacter michiganensis subsp. michiganensis Clavibacter michiganensis subsp. sepedonicus Arthrobacter sp. FB24 Arthrobacter aurescens Renibacterium salmoninarum Kocuria rhizophila Nocardioides sp. JS614 Thermobifida fusca Frankia sp. CcI3 Frankia sp. EAN1pec Frankia alni Kineococcus radiotolerans Saccharopolyspora erythraea Salinispora tropica Salinispora arenicola Rubrobacter xylanophilus Fusobacterium nucleatum Rhodopirellula baltica Akkermansia muciniphila Leptospira interrogans serovar Copenhageni Synechococcus sp. CC9605 Microcystis aeruginosa Cyanothece sp. ATCC 51142 Gloeobacter violaceus Anabaena sp. PCC7120 Nostoc punctiforme Anabaena variabilis Prochlorococcus marinus MED4 Prochlorococcus marinus MIT9313 Bacteroides vulgatus Porphyromonas gingivalis W83 Parabacteroides distasonis Salinibacter ruber Cytophaga hutchinsonii Gramella forsetii Flavobacterium johnsoniae Flavobacterium psychrophilum Chloroherpeton thalassium Roseiflexus sp. RS-1 Roseiflexus castenholzii DSM13941 Chloroflexus aurantiacus Herpetosiphon aurantiacus Deinococcus radiodurans Deinococcus geothermalis Thermus thermophilus HB27 Thermus thermophilus HB8 Methanococcus maripaludis S2 Methanococcus maripaludis C6 Methanococcus maripaludis C7 Methanococcus aeolicus Methanococcus vannielii Methanosarcina mazei Candidatus Methanoregula boonei Methanobacterium thermoautotrophicum Archaeoglobus fulgidus Halobacterium sp. NRC-1 Halobacterium salinarum R1 Haloarcula marismortui Haloquadratum walsbyi Natronomonas pharaonis Thermoplasma acidophilum Thermoplasma volcanium Uncultured methanogenic archaeon RC-I Hyperthermus butylicus Sulfolobus solfataricus Sulfolobus tokodaii Sulfolobus acidocaldarius Metallosphaera sedula Pyrobaculum calidifontis Pyrobaculum arsenaticum Caldivirga maquilingensis     Current selection