Lysine degradation - Reference pathway

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Reference pathway Reference pathway (Reaction) Reference pathway (KO) -----< Sort below by alphabet >----- Homo sapiens (human) Pan troglodytes (chimpanzee) Macaca mulatta (rhesus monkey) Mus musculus (mouse) Rattus norvegicus (rat) Canis familiaris (dog) Bos taurus (cow) Sus scrofa (pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Xenopus laevis (African clawed frog) Xenopus tropicalis (western clawed frog) Danio rerio (zebrafish) Strongylocentrotus purpuratus (purple sea urchin) Nematostella vectensis (sea anemone) Drosophila melanogaster (fruit fly) Drosophila pseudoobscura Anopheles gambiae (mosquito) Aedes aegypti (yellow fever mosquito) Tribolium castaneum (red flour beetle) Caenorhabditis elegans (nematode) Caenorhabditis briggsae Brugia malayi (filaria) Arabidopsis thaliana (thale cress) Oryza sativa japonica (Japanese rice) Physcomitrella patens subsp. patens Ostreococcus lucimarinus Chlamydomonas reinhardtii Cyanidioschyzon merolae Saccharomyces cerevisiae Ashbya gossypii (Eremothecium gossypii) Kluyveromyces lactis Debaryomyces hansenii Pichia stipitis Vanderwaltozyma polyspora Candida albicans Candida glabrata Yarrowia lipolytica Schizosaccharomyces pombe Neurospora crassa Podospora anserina Magnaporthe grisea Fusarium graminearum Aspergillus nidulans Aspergillus fumigatus Aspergillus oryzae Aspergillus niger Cryptococcus neoformans JEC21 Cryptococcus neoformans B-3501A Laccaria bicolor Ustilago maydis Malassezia globosa Monosiga brevicollis Giardia lamblia Dictyostelium discoideum Plasmodium falciparum 3D7 Plasmodium falciparum Dd2 Plasmodium falciparum HB3 Plasmodium yoelii Theileria annulata Theileria parva Cryptosporidium hominis Tetrahymena thermophila Paramecium tetraurelia Trypanosoma brucei Trypanosoma cruzi Leishmania major Trichomonas vaginalis Escherichia coli K-12 MG1655 Escherichia coli K-12 W3110 Escherichia coli K-12 DH10B Escherichia coli O157 EDL933 (EHEC) Escherichia coli O157 Sakai (EHEC) Escherichia coli CFT073 (UPEC) Escherichia coli UTI89 (UPEC) Escherichia coli 536 (UPEC) Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli HS Escherichia coli SECEC Escherichia coli ATCC 8739 Salmonella enterica subsp. enterica serovar Typhi CT18 Salmonella enterica subsp. enterica serovar Typhi Ty2 Salmonella enterica subsp. enterica serovar Paratyphi A Salmonella enterica subsp. enterica serovar Paratyphi B Salmonella enterica subsp. enterica serovar Choleraesuis Salmonella enterica subsp. enterica serovar Heidelber Salmonella enterica subsp. enterica serovar Newport Salmonella enterica subsp. enterica serovar Schwarzengrund Salmonella enterica subsp. arizonae Salmonella typhimurium LT2 Yersinia pestis CO92 Yersinia pestis KIM Yersinia pestis Mediaevails Yersinia pestis Antiqua Yersinia pestis Nepal516 Yersinia pestis Pestoides Yersinia pestis Angola Yersinia pseudotuberculosis IP32953 Yersinia pseudotuberculosis IP31758 Yersinia pseudotuberculosis YPIII Yersinia pseudotuberculosis PB1/+ Yersinia enterocolitica Shigella flexneri 301 (serotype 2a) Shigella flexneri 2457T (serotype 2a) Shigella flexneri 8401 (serotype 5b) Shigella sonnei Shigella boydii Sb227 Shigella boydii CDC 3083-94 Shigella dysenteriae Erwinia carotovora Erwinia tasmaniensis Photorhabdus luminescens Buchnera aphidicola APS Buchnera aphidicola Sg Buchnera aphidicola Bp Buchnera aphidicola Cc Wigglesworthia glossinidia Sodalis glossinidius Enterobacter sp. 638 Enterobacter sakazakii Klebsiella pneumoniae Citrobacter koseri ATCC BAA-895 Serratia proteamaculans Candidatus Blochmannia floridanus Candidatus Blochmannia pennsylvanicus Haemophilus influenzae 86-028NP (nontypeable) Haemophilus influenzae PittEE Haemophilus influenzae PittGG Haemophilus ducreyi Haemophilus somnus 129PT Haemophilus somnus 2336 Pasteurella multocida Mannheimia succiniciproducens Actinobacillus pleuropneumoniae L20 (serotype 5b) Actinobacillus pleuropneumoniae JL03 (serotype 3) Actinobacillus pleuropneumoniae AP76 (serotype 7) Actinobacillus succinogenes Xylella fastidiosa 9a5c Xylella fastidiosa Temecula1 Xylella fastidiosa M12 Xylella fastidiosa M23 Xanthomonas campestris pv. campestris ATCC 33913 Xanthomonas campestris pv. campestris 8004 Xanthomonas campestris pv. vesicatoria Xanthomonas axonopodis Xanthomonas oryzae KACC10331 Xanthomonas oryzae MAFF311018 Stenotrophomonas maltophilia Stenotrophomonas maltophilia R551-3 Vibrio cholerae O1 Vibrio cholerae O395 Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Vibrio parahaemolyticus Vibrio fischeri Vibrio harveyi Photobacterium profundum Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa UCBPP-PA14 Pseudomonas aeruginosa PA7 Pseudomonas putida KT2440 Pseudomonas putida F1 Pseudomonas putida GB-1 Pseudomonas putida W619 Pseudomonas syringae pv. tomato DC3000 Pseudomonas syringae pv. syringae B728a Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas fluorescens Pf-5 Pseudomonas fluorescens PfO-1 Pseudomonas entomophila Pseudomonas mendocina Pseudomonas stutzeri Cellvibrio japonicus Psychrobacter arcticum Psychrobacter cryohalolentis Psychrobacter sp. PRwf-1 Acinetobacter sp. ADP1 Acinetobacter baumannii ATCC 17978 Acinetobacter baumannii SDF Acinetobacter baumannii AYE Acinetobacter baumannii ACICU Shewanella oneidensis Shewanella denitrificans Shewanella frigidimarina Shewanella amazonensis Shewanella baltica OS155 Shewanella baltica OS185 Shewanella baltica OS195 Shewanella loihica Shewanella putrefaciens Shewanella sediminis Shewanella pealeana Shewanella sp. MR-4 Shewanella sp. MR-7 Shewanella sp. ANA-3 Shewanella sp. W3-18-1 Shewanella halifaxensis Shewanella woodyi ATCC51908 Idiomarina loihiensis Colwellia psychrerythraea Pseudoalteromonas haloplanktis Pseudoalteromonas atlantica Saccharophagus degradans Psychromonas ingrahamii Marinobacter aquaeolei Coxiella burnetii RSA 493 Coxiella burnetii RSA 331 Coxiella burnetii Dugway 5J108-111 Legionella pneumophila Philadelphia 1 Legionella pneumophila Lens Legionella pneumophila Paris Legionella pneumophila Corby Methylococcus capsulatus Francisella tularensis subsp. tularensis SCHU S4 Francisella tularensis subsp. tularensis FSC 198 Francisella tularensis subsp. tularensis WY96-3418 Francisella tularensis subsp. holarctica LVS Francisella tularensis subsp. holarctica OSU18 Francisella tularensis subsp. holarctica FTNF002-00 Francisella tularensis subsp. novicida U112 Francisella tularensis subsp. mediasiatica FSC147 Francisella philomiragia Thiomicrospira crunogena Nitrosococcus oceani Alkalilimnicola ehrlichei Halorhodospira halophila Hahella chejuensis Chromohalobacter salexigens Alcanivorax borkumensis Marinomonas sp. MWYL1 Aeromonas hydrophila Aeromonas salmonicida Dichelobacter nodosus Candidatus Ruthia magnifica Candidatus Vesicomyosocius okutanii Neisseria meningitidis MC58 (serogroup B) Neisseria meningitidis Z2491 (serogroup A) Neisseria meningitidis FAM18 (serogroup C) Neisseria meningitidis 053442 (serogroup C) Neisseria gonorrhoeae Neisseria gonorrhoeae NCCP11945 Chromobacterium violaceum Ralstonia solanacearum Ralstonia eutropha JMP134 Ralstonia eutropha H16 Ralstonia metallidurans Cupriavidus taiwanensis Burkholderia mallei ATCC 23344 Burkholderia mallei SAVP1 Burkholderia mallei NCTC 10229 Burkholderia mallei NCTC 10247 Burkholderia xenovorans Burkholderia vietnamiensis Burkholderia sp. 383 Burkholderia cenocepacia AU1054 Burkholderia cenocepacia HI2424 Burkholderia cenocepacia MC0-3 Burkholderia cepacia Burkholderia ambifaria MC40-6 Burkholderia multivorans ATCC 17616 (JGI) Burkholderia multivorans ATCC 17616 (Tohoku) Burkholderia pseudomallei K96243 Burkholderia pseudomallei 1710b Burkholderia pseudomallei 1106a Burkholderia pseudomallei 668 Burkholderia thailandensis Burkholderia phymatum Polynucleobacter sp. QLW-P1DMWA-1 Polynucleobacter necessarius Bordetella pertussis Bordetella parapertussis Bordetella bronchiseptica Bordetella petrii Bordetella avium Rhodoferax ferrireducens Polaromonas sp. JS666 Polaromonas naphthalenivorans Acidovorax avenae Acidovorax sp. JS42 Verminephrobacter eiseniae Delftia acidovorans Methylibium petroleiphilum Herminiimonas arsenicoxydans Minibacterium massiliensis Leptothrix cholodnii Nitrosomonas europaea Nitrosomonas eutropha Nitrosospira multiformis Azoarcus sp. EbN1 Azoarcus sp. BH72 Dechloromonas aromatica Thiobacillus denitrificans Methylobacillus flagellatus Helicobacter pylori 26695 Helicobacter pylori J99 Helicobacter pylori HPAG1 Helicobacter pylori Shi470 Helicobacter hepaticus Helicobacter acinonychis Campylobacter jejuni RM1221 Campylobacter jejuni 81-176 Campylobacter jejuni 81116 Campylobacter jejuni subsp. doylei 269.97 Campylobacter fetus Campylobacter curvus Campylobacter hominis ATCC BAA-381 Campylobacter concisus 13826 Arcobacter butzleri Nitratiruptor sp. SB155-2 Sulfurovum sp. NBC37-1 Geobacter sulfurreducens Geobacter metallireducens Geobacter uraniumreducens Geobacter lovleyi Pelobacter carbinolicus Desulfovibrio desulfuricans Bdellovibrio bacteriovorus Desulfotalea psychrophila Candidatus Desulfococcus oleovorans Anaeromyxobacter dehalogenans Anaeromyxobacter sp. Fw109-5 Myxococcus xanthus Sorangium cellulosum Syntrophus aciditrophicus Syntrophobacter fumaroxidans Rickettsia prowazekii Rickettsia typhi Rickettsia conorii Rickettsia felis Rickettsia bellii RML369-C Rickettsia bellii OSU 85-389 Rickettsia akari Rickettsia canadensis Rickettsia rickettsii Sheila Smith Rickettsia rickettsii Iowa Rickettsia massiliae Orientia tsutsugamushi Boryong Orientia tsutsugamushi Ikeda Wolbachia wMel Wolbachia wBm Wolbachia pipientis Anaplasma marginale Anaplasma phagocytophilum Ehrlichia ruminantium Welgevonden (South Africa) Ehrlichia ruminantium Welgevonden (France) Ehrlichia ruminantium Gardel Ehrlichia canis Ehrlichia chaffeensis Neorickettsia sennetsu Candidatus Pelagibacter ubique Mesorhizobium loti Mesorhizobium sp. BNC1 Parvibaculum lavamentivorans Sinorhizobium meliloti Sinorhizobium medicae Agrobacterium tumefaciens C58 (UWash/Dupont) Agrobacterium tumefaciens C58 (Cereon) Rhizobium etli CFN 42 Rhizobium etli CIAT 652 Rhizobium leguminosarum Brucella melitensis 16M Brucella melitensis biovar Abortus Brucella abortus 9-941 Brucella abortus S19 Brucella suis 1330 Brucella suis ATCC 23445 Brucella ovis Brucella canis Ochrobactrum anthropi Bradyrhizobium japonicum Bradyrhizobium sp. ORS278 Bradyrhizobium sp. BTAi1 Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris TIE-1 Nitrobacter winogradskyi Nitrobacter hamburgensis Bartonella henselae Bartonella quintana Bartonella bacilliformis Bartonella tribocorum Xanthobacter autotrophicus Azorhizobium caulinodans Methylobacterium extorquens Methylobacterium radiotolerans Methylobacterium sp. 4-46 Beijerinckia indica Caulobacter crescentus Caulobacter sp. K31 Silicibacter pomeroyi Silicibacter sp. TM1040 Rhodobacter sphaeroides 2.4.1 Rhodobacter sphaeroides ATCC 17029 Rhodobacter sphaeroides ATCC 17025 Jannaschia sp. CCS1 Roseobacter denitrificans Paracoccus denitrificans Dinoroseobacter shibae Maricaulis maris Hyphomonas neptunium Novosphingobium aromaticivorans Sphingopyxis alaskensis Sphingomonas wittichii Erythrobacter litoralis Gluconobacter oxydans Granulobacter bethesdensis Acidiphilium cryptum JF-5 Gluconacetobacter diazotrophicus Rhodospirillum rubrum Magnetospirillum magneticum Magnetococcus sp. MC-1 Acidobacteria bacterium Solibacter usitatus Syntrophomonas wolfei Caldicellulosiruptor saccharolyticus Bacillus subtilis Bacillus halodurans Bacillus anthracis Ames Bacillus anthracis Ames 0581 Bacillus anthracis A2012 Bacillus anthracis Sterne Bacillus cereus ATCC 14579 Bacillus cereus ATCC 10987 Bacillus cereus ZK Bacillus cereus subsp. cytotoxis NVH 391-98 Bacillus thuringiensis 97-27 Bacillus thuringiensis Al Hakam Bacillus weihenstephanensis Bacillus licheniformis ATCC 14580 Bacillus licheniformis DSM13 Bacillus clausii Bacillus amyloliquefaciens Bacillus pumilus Oceanobacillus iheyensis Geobacillus kaustophilus Geobacillus thermodenitrificans Lysinibacillus sphaericus Exiguobacterium sibiricum Staphylococcus aureus N315 Staphylococcus aureus Mu50 Staphylococcus aureus Mu3 Staphylococcus aureus MW2 Staphylococcus aureus MRSA252 Staphylococcus aureus MSSA476 Staphylococcus aureus COL Staphylococcus aureus RF122 Staphylococcus aureus USA300 Staphylococcus aureus USA300 TCH1516 Staphylococcus aureus NCTC8325 Staphylococcus aureus JH9 Staphylococcus aureus JH1 Staphylococcus aureus Newman Staphylococcus epidermidis ATCC 12228 Staphylococcus epidermidis RP62A Staphylococcus haemolyticus Staphylococcus saprophyticus Listeria monocytogenes EGD-e Listeria monocytogenes F2365 Listeria innocua Listeria welshimeri SLCC5334 Streptococcus pyogenes SF370 (serotype M1) Streptococcus pyogenes MGAS5005 (serotype M1) Streptococcus pyogenes MGAS8232 (serotype M18) Streptococcus pyogenes MGAS315 (serotype M3) Streptococcus pyogenes SSI-1 (serotype M3) Streptococcus pyogenes MGAS10270 (serotype M3) Streptococcus pyogenes MGAS10750 (serotype M3) Streptococcus pyogenes MGAS2096 (serotype M3) Streptococcus pyogenes MGAS9429 (serotype M3) Streptococcus pyogenes Manfredo (serotype M5) Streptococcus pyogenes MGAS10394 (serotype M6) Streptococcus pyogenes MGAS6180 (serotype M28) Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae R6 Streptococcus pneumoniae D39 Streptococcus pneumoniae Hungary19A 6 Streptococcus pneumoniae CGSP14 Streptococcus pneumoniae G54 Streptococcus agalactiae A909 (serotype Ia) Streptococcus suis 05ZYH33 Streptococcus suis 98HAH33 Lactobacillus plantarum Lactobacillus johnsonii Lactobacillus acidophilus Lactobacillus sakei Lactobacillus delbrueckii ATCC 11842 Lactobacillus brevis Lactobacillus gasseri Lactobacillus reuteri F275 (JGI) Lactobacillus reuteri F275 (Kitasato) Lactobacillus helveticus Symbiobacterium thermophilum Clostridium acetobutylicum Clostridium perfringens 13 Clostridium perfringens ATCC 13124 Clostridium perfringens SM101 Clostridium tetani E88 Clostridium novyi Clostridium difficile Clostridium botulinum A ATCC 3502 Clostridium botulinum A ATCC 19397 Clostridium botulinum A Hall Clostridium botulinum A3 Loch Maree Clostridium botulinum B Eklund 17B Clostridium botulinum B1 Okra Clostridium botulinum F Langeland Clostridium beijerinckii Clostridium kluyveri Clostridium phytofermentans Alkaliphilus metalliredigens Alkaliphilus oremlandii Carboxydothermus hydrogenoformans Desulfitobacterium hafniense Desulfotomaculum reducens Pelotomaculum thermopropionicum Candidatus Desulforudis audaxviator Heliobacterium modesticaldum Finegoldia magna Thermoanaerobacter tengcongensis Moorella thermoacetica Acholeplasma laidlawii Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis F11 Mycobacterium bovis AF2122/97 Mycobacterium bovis BCG Pasteur 1173P2 Mycobacterium leprae Mycobacterium avium paratuberculosis Mycobacterium avium 104 Mycobacterium smegmatis Mycobacterium ulcerans Mycobacterium vanbaalenii Mycobacterium gilvum Mycobacterium abscessus ATCC 19977T Mycobacterium sp. MCS Mycobacterium sp. KMS Mycobacterium sp. JLS Mycobacterium marinum M Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) Corynebacterium glutamicum ATCC 13032 (Bielefeld) Corynebacterium glutamicum R Corynebacterium efficiens Corynebacterium diphtheriae Corynebacterium jeikeium Corynebacterium urealyticum Nocardia farcinica Rhodococcus sp. RHA1 Streptomyces coelicolor Streptomyces avermitilis Streptomyces griseus Leifsonia xyli xyli CTCB07 Clavibacter michiganensis subsp. michiganensis Clavibacter michiganensis subsp. sepedonicus Arthrobacter sp. FB24 Arthrobacter aurescens Renibacterium salmoninarum Kocuria rhizophila Propionibacterium acnes Nocardioides sp. JS614 Thermobifida fusca Frankia sp. CcI3 Frankia sp. EAN1pec Frankia alni Acidothermus cellulolyticus Kineococcus radiotolerans Saccharopolyspora erythraea Salinispora tropica Salinispora arenicola Bifidobacterium longum DJO10A Rubrobacter xylanophilus Fusobacterium nucleatum Rhodopirellula baltica Opitutus terrae Methylacidiphilum infernorum Akkermansia muciniphila Chlamydia trachomatis D/UW-3/CX (serovar D) Chlamydia trachomatis A/HAR-13 (serovar A) Chlamydia trachomatis 434/Bu Chlamydia trachomatis L2b/UCH-1/proctitis Chlamydia muridarum Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae AR39 Chlamydophila pneumoniae J138 Chlamydophila pneumoniae TW183 Chlamydophila caviae Chlamydophila abortus Chlamydophila felis Candidatus Protochlamydia amoebophila Borrelia turicatae Leptospira interrogans serovar lai Leptospira interrogans serovar Copenhageni Leptospira borgpetersenii JB197 Leptospira borgpetersenii L550 Leptospira biflexa serovar Patoc Patoc 1 (Paris) Leptospira biflexa serovar Patoc Patoc 1 (Ames) Synechocystis sp. PCC6803 Synechococcus sp. WH8102 Synechococcus elongatus PCC6301 Synechococcus elongatus PCC7942 Synechococcus sp. CC9605 Synechococcus sp. CC9902 Synechococcus sp. CC9311 Synechococcus sp. RCC307 Synechococcus sp. WH7803 Microcystis aeruginosa Cyanothece sp. ATCC 51142 Gloeobacter violaceus Anabaena sp. PCC7120 Nostoc punctiforme Anabaena variabilis Prochlorococcus marinus SS120 Prochlorococcus marinus MED4 Prochlorococcus marinus MIT9313 Prochlorococcus marinus NATL2A Prochlorococcus marinus MIT9312 Prochlorococcus marinus AS9601 Prochlorococcus marinus MIT 9515 Prochlorococcus marinus MIT 9303 Prochlorococcus marinus MIT 9301 Prochlorococcus marinus MIT 9215 Prochlorococcus marinus MIT 9211 Prochlorococcus marinus NATL1A Trichodesmium erythraeum Acaryochloris marina Porphyromonas gingivalis W83 Porphyromonas gingivalis ATCC 33277 Salinibacter ruber Cytophaga hutchinsonii Gramella forsetii Flavobacterium johnsoniae Flavobacterium psychrophilum Candidatus Sulcia muelleri Candidatus Amoebophilus asiaticus Chlorobaculum parvum NCIB 8327 Chlorobium phaeobacteroides BS1 Pelodictyon phaeoclathratiforme Chloroherpeton thalassium Prosthecochloris aestuarii Roseiflexus sp. RS-1 Roseiflexus castenholzii DSM13941 Chloroflexus aurantiacus Herpetosiphon aurantiacus Deinococcus radiodurans Deinococcus geothermalis Thermus thermophilus HB27 Thermus thermophilus HB8 Aquifex aeolicus Thermotoga lettingae Thermosipho melanesiensis Fervidobacterium nodosum Petrotoga mobilis Methanosarcina acetivorans Methanosarcina barkeri Methanosarcina mazei Methanoculleus marisnigri Archaeoglobus fulgidus Halobacterium sp. NRC-1 Halobacterium salinarum R1 Haloarcula marismortui Haloquadratum walsbyi Natronomonas pharaonis Thermoplasma acidophilum Thermoplasma volcanium Picrophilus torridus Aeropyrum pernix Ignicoccus hospitalis Sulfolobus solfataricus Sulfolobus tokodaii Sulfolobus acidocaldarius Metallosphaera sedula Pyrobaculum aerophilum Pyrobaculum islandicum Pyrobaculum calidifontis Caldivirga maquilingensis Thermoproteus neutrophilus Nitrosopumilus maritimus Candidatus Korarchaeum cryptofilum     Current selection