KEGG Encyclopedia

KEGG - Table of Contents

KEGG2	ATLAS	PATHWAY	BRITE	GENES	SSDB	LIGAND	DBGET

	Category	Entry Point	Release Info	Search & Compute	DBGET Search


	Systems information	KEGG ATLAS KEGG PATHWAY KEGG BRITE	New maps Update status New hierarchies Update status	KEGG metabolism map Search objects in pathways Color objects in pathways Map relations to hierarchies KEGG Orthology (KO)	PATHWAY BRITE MODULE DISEASE

	Genomic information	KEGG GENES	New organisms Update status	SSDB search BLAST search FASTA search EGassembler for ESTs KAAS automatic annotation GENIES network prediction	ORTHOLOGY GENES DGENES / EGENES GENOME VGENES / OGENES VGENOME

	Chemical information	KEGG LIGAND	Update status	SIMCOMP compound search KCaM glycan search e-zyme reaction prediction PathComp computation	COMPOUND DRUG GLYCAN REACTION RPAIR ENZYME

See Kanehisa et al. (2008) for the new features of KEGG.

KEGG2	DISEASE	DRUG	GLYCAN	COMPOUND	REACTION	Organisms

KEGG for specific organisms

KEGG Organisms - the list of currently available organisms

Choose (examples) hsa mmu sce eco bsu syn

Customize the organism menu in pathway maps with selected organisms
Show currently selected organisms

KEGG for selected research areas

Category	Entry Point	Pathway	Brite


Disease	KEGG DISEASE	Human diseases	Pathogens and infectious diseases Human diseases ICD-10 disease classification

Drug	KEGG DRUG	Drug development	Therapeutic category of drugs (Japan) USP drug classification (USA) ATC classification (WHO) TCM drugs in Japan

Glycan	KEGG GLYCAN	Glycan metabolism	Glycosyltransferases Glycan binding proteins

Lipid PK/NRP Peptide	KEGG COMPOUND	Lipid metabolism PK/NRP biosynthesis	Lipids Polyketides and nonribosomal peptides Bioactive peptides

Biodegradation	KEGG REACTION	Xenobiotics metabolism

KEGG for computational analysis

KAAS - Genome/EST annotation

EXPRESSION - Gene expression data analysis

KEGG for software development

KGML - XML representation of KEGG pathways [document]

KEGG API - SOAP/WSDL interface for the KEGG system [document]

KEGG web links - URLs for linking to the KEGG website [document]

Desktop applications for utilizing KEGG

KegHier - Java application for browsing KEGG BRITE

KegArray - Java application for microarray data analysis

KegDraw - Java application for drawing compound/glycan structures

Last updated: July 1, 2008

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