Update Status of the GENES Database

Species Number of genes Last update

all ko enzyme pathway sequence annotation

H.sapiens 24293 8141 3007 4654 08-7-17 08-8-19

P.troglodytes 25195 6995 2483 3972 08-7-15 08-8-19

M.mulatta 23980 6867 2438 3950 08-7-14 08-8-19

M.musculus 29554 8726 2934 5134 08-7-14 08-8-19

R.norvegicus 26219 7360 2396 4270 08-7-14 08-8-19

C.familiaris 19825 7144 2595 4111 08-7-14 08-8-19

B.taurus 24153 4810 1753 2590 08-7-14 08-8-19

S.scrofa 1813 833 316 599 08-7-14 08-8-19

M.domestica 19136 6004 2284 3573 08-5-13 08-8-19

O.anatinus 16411 5434 2170 3115 08-7-15 08-8-14

G.gallus 18131 5223 2076 2151 08-7-14 08-8-19

X.laevis 10548 2733 1300 1413 08-7-14 08-8-19

X.tropicalis 8012 1683 746 841 08-7-14 08-8-19

D.rerio 27438 3632 1529 1562 08-7-14 08-8-19

S.purpuratus 28907 2406 1263 1262 08-7-14 08-8-19

N.vectensis 24773 2210 1242 1206 07-11-2 08-8-19

D.melanogaster 14168 3842 2662 2248 08-3-17 08-8-19

D.pseudoobscura 9869 2122 1194 1183 08-7-15 08-8-19

A.gambiae 12484 3377 2024 1817 08-7-23 08-8-15

A.aegypti 15456 3759 2300 2038 08-6-25 08-8-14

T.castaneum 9785 3177 1888 1776 08-7-15 08-8-14

C.elegans 20210 2891 1288 1201 08-7-16 08-8-19

C.briggsae 16465 2345 1159 1089 08-7-3 08-8-14

B.malayi 11395 2323 1229 1154 08-6-17 08-8-14

A.thaliana 27284 3231 1833 1989 08-7-15 08-8-19

O.sativa 28662 2624 1554 1656 08-3-7 08-8-19

P.patens_patens 36127 4441 2502 2670 08-5-15 08-8-14

O.lucimarinus 7603 1635 959 972 07-11-2 08-8-19

C.reinhardtii 14473 2331 1444 1338 08-7-15 08-8-14

C.merolae 5013 1302 819 853 05-2-18 08-8-19

S.cerevisiae 6298 2074 1240 1296 08-2-28 08-8-15

A.gossypii 4750 1588 965 990 08-2-5 08-8-19

K.lactis 5360 1546 933 946 08-5-23 08-8-19

D.hansenii 6351 1616 1016 1039 08-5-27 08-8-15

P.stipitis 5816 1810 1233 1210 08-7-16 08-8-15

V.polyspora 5359 1967 1175 1160 08-5-27 08-8-13

C.albicans 14661 856 473 513 08-7-15 08-8-19

C.glabrata 5217 1675 1012 1024 08-7-15 08-8-19

Y.lipolytica 6572 2134 1369 1255 07-10-2 08-8-2

S.pombe 5031 1666 990 1029 08-7-16 08-8-19

N.crassa 9824 2219 1530 1357 08-5-15 08-8-13

P.anserina 10301 2101 1406 1307 08-7-15 08-8-13

M.grisea 14010 1734 1135 1100 08-3-19 08-8-15

F.graminearum 11686 2520 1794 1532 08-3-21 08-8-2

A.nidulans 9541 1599 1017 1003 08-3-19 08-8-15

A.fumigatus 9630 2922 2290 1850 08-7-23 08-8-19

A.oryzae 12099 1852 1227 1167 08-5-21 08-8-19

A.niger 14129 2474 1790 1561 08-5-27 08-8-2

C.neoformans 6273 1388 902 904 07-11-28 08-8-15

C.neoformans_B3501A 6500 1391 901 901 08-3-21 08-8-2

L.bicolor 18215 2069 1370 1252 08-5-19 08-8-2

U.maydis 6562 1218 777 756 08-2-8 08-8-19

M.globosa 4286 1485 948 905 08-3-24 08-8-2

E.cuniculi 1996 448 205 300 08-5-27 08-8-19

M.brevicollis 9230 2343 1454 1128 08-3-26 08-8-14

G.lamblia 6500 800 482 415 08-7-15 08-8-13

D.discoideum 13458 1547 887 867 08-5-27 08-8-19

P.falciparum 5261 917 601 571 08-7-30 08-8-15

P.falciparum_Dd2 4955 707 479 422 08-6-23 08-8-13

P.falciparum_HB3 5367 908 588 551 08-6-25 08-8-13

P.yoelii 7353 753 437 449 08-2-5 08-8-15

T.annulata 3795 827 480 477 08-3-19 08-8-15

T.parva 4087 712 407 418 08-2-6 08-8-19

C.parvum 3805 530 257 331 08-7-15 08-8-19

C.hominis 3885 600 315 351 08-7-23 08-8-19

T.thermophila 26066 1967 1509 993 08-4-16 08-8-19

P.tetraurelia 40043 4270 2634 2043 08-6-30 08-8-13

T.brucei 8712 1387 922 833 08-7-15 08-8-15

T.cruzi 19607 1863 1147 1173 08-2-6 08-8-19

L.major 8264 1363 844 817 08-7-15 08-8-19

E.histolytica 8162 1084 541 601 08-7-16 08-8-19

T.vaginalis 59679 1271 655 715 08-7-16 08-8-19

E.coli 4467 2768 1331 1410 08-6-20 08-8-19

E.coli_J 4494 2720 1330 1358 06-3-15 08-8-19

E.coli_DH10B 4357 2765 1350 1355 08-3-21 08-8-15

E.coli_O157 5542 2947 1314 1430 08-7-31 08-8-19

E.coli_O157J 5460 2892 1301 1407 08-6-30 08-8-19

E.coli_CFT073 5549 2780 1328 1410 08-7-31 08-8-16

E.coli_UTI89 5276 2824 1375 1433 08-6-11 08-8-16

E.coli_536 4780 2648 1307 1369 08-6-11 08-8-16

E.coli_APEC 4965 2595 1300 1345 08-6-30 08-8-19

E.coli_E24377A 5264 2854 1384 1396 07-11-7 08-8-15

E.coli_HS 4630 2817 1359 1398 08-7-30 08-8-15

E.coli_SECEC 5128 2962 1443 1480 08-3-27 08-8-15

E.coli_ATCC8739 4409 2830 1376 1425 08-5-13 08-8-15

S.typhi 5086 2625 1281 1364 08-4-10 08-8-19

S.typhi_Ty2 4645 2579 1249 1348 08-7-22 08-8-19

S.enterica_Paratyphi 4403 2506 1231 1331 08-1-10 08-8-19

S.enterica_Paratyphi_B 5779 2316 1186 1277 08-5-8 08-8-19

S.enterica_Choleraesuis 4895 2532 1258 1314 08-6-11 08-8-19

S.enterica_Heidelberg 5111 2674 1298 1373 08-7-30 08-8-13

S.enterica_Newport 5115 2674 1303 1367 08-8-1 08-8-13

S.enterica_Schwarzengrund 4934 2623 1261 1344 08-8-4 08-8-15

S.enterica_arizonae 4687 2559 1237 1305 08-7-24 08-8-7

S.typhimurium 4734 2724 1303 1414 08-6-3 08-8-19

Y.pestis 4331 2493 1047 1273 08-7-24 08-8-16

Y.pestis_KIM 4359 2316 1052 1255 08-7-31 08-8-19

Y.pestis_Mediaevails 4405 2376 1058 1290 08-3-14 08-8-16

Y.pestis_Antiqua 4471 2428 1099 1305 08-8-8 08-8-16

Y.pestis_Nepal516 4204 2331 1079 1256 08-4-16 08-8-16

Y.pestis_Pestoides 4263 1323 794 834 08-6-5 08-8-19

Y.pestis_Angola 4469 2349 1068 1209 08-4-11 08-8-7

Y.pseudotuberculosis 4238 2445 1110 1305 08-1-21 08-8-19

Y.pseudotuberculosis_IP31758 4494 2443 1141 1304 08-3-7 08-8-7

Y.pseudotuberculosis_YPIII 4305 2430 1139 1286 08-4-3 08-8-7

Y.pseudotuberculosis_PB1 4349 2455 1126 1294 08-8-5 08-8-15

Y.enterocolitica 4281 1977 1069 1137 08-1-23 08-8-19

S.flexneri 4830 2419 1173 1230 08-6-12 08-8-19

S.flexneri_2457T 4571 2388 1156 1225 08-7-22 08-8-19

S.flexneri_8401 4433 2516 1184 1205 08-7-31 08-8-19

S.sonnei 4805 2533 1224 1264 08-7-22 08-8-16

S.boydii 4615 2358 1160 1189 08-7-16 08-8-16

S.boydii_CDC3083-94 5336 2094 1032 1115 08-5-13 08-8-16

S.dysenteriae 4894 2213 1062 1099 08-7-16 08-8-19

E.carotovora 4614 2536 1181 1399 08-1-9 08-8-19

E.tasmaniensis 3804 2145 1025 1138 08-6-17 08-8-13

P.luminescens 5012 2048 999 1110 08-7-29 08-8-19

Buchnera 618 543 323 367 08-7-23 08-8-6

B.aphidicola_Sg 619 518 300 348 08-7-22 08-8-6

B.aphidicola_Bp 553 479 281 320 08-7-30 08-8-6

B.aphidicola_Cc 397 343 187 220 08-1-11 08-8-6

W.brevipalpis 657 551 326 385 07-12-21 08-8-19

S.glossinidius 2607 1522 735 837 08-1-22 08-8-16

Enterobacter_638 4385 2319 1175 963 08-4-16 08-8-16

E.sakazakii 4557 2452 1200 1269 08-6-11 08-8-7

K.pneumoniae 5306 3033 1523 1587 07-7-31 08-8-7

C.koseri 5153 2155 1156 1161 08-6-9 08-8-19

S.proteamaculans 5064 2670 1311 1435 08-8-5 08-8-19

B.floridanus 631 551 345 371 08-7-23 08-8-16

B.pennsylvanicus 658 572 359 384 08-1-10 08-8-16

H.influenzae 1789 1233 610 625 07-12-18 08-8-19

H.influenzae_NT 1899 1225 653 639 08-1-11 08-8-16

H.influenzae_PittEE 1704 1129 598 607 08-1-29 08-8-7

H.influenzae_PittGG 1753 1093 564 576 08-2-14 08-8-7

H.ducreyi 1838 1077 520 547 08-1-10 08-8-16

H.somnus 1879 1206 633 642 08-7-31 08-8-19

H.somnus_2336 2065 1270 657 672 08-7-24 08-8-7

P.multocida 2092 1476 731 774 08-7-24 08-8-16

M.succiniciproducens 2459 1423 727 751 08-7-24 08-8-19

A.pleuropneumoniae 2109 1345 729 693 08-1-4 08-8-16

A.pleuropneumoniae_JL03 2147 1423 734 752 08-1-25 08-8-7

A.pleuropneumoniae_AP76 2220 1468 747 769 08-6-23 08-8-13

A.succinogenes 2199 1467 785 779 08-1-22 08-8-7

X.fastidiosa 2905 1238 637 683 07-12-21 08-8-16

X.fastidiosa_T 2125 1175 621 652 07-12-21 08-8-16

X.fastidiosa_M12 2368 1120 621 614 08-3-27 08-8-13

X.fastidiosa_M23 2320 1129 621 629 08-4-15 08-8-13

X.campestris 4242 2059 1064 1127 07-12-13 08-8-16

X.campestris_B 4370 2040 1064 1122 08-8-8 08-8-16

X.campestris_vesicatoria 4854 2255 1120 1169 08-1-17 08-8-19

X.axonopodis 4489 2094 1072 1156 07-12-13 08-8-16

X.oryzae 4362 1769 936 956 08-4-23 08-8-19

X.oryzae_MAFF311018 4431 1823 950 979 08-1-22 08-8-16

S.maltophilia 4466 1928 985 987 08-6-24 08-8-13

S.maltophilia_R551-3 4134 1881 978 975 08-7-28 08-8-13

V.cholerae 4008 2115 956 1159 07-12-6 08-8-16

V.cholerae_O395 3998 2090 960 1154 08-5-14 08-8-16

V.vulnificus 4623 2259 1065 1222 08-2-14 08-8-16

V.vulnificus_YJ016 5227 2325 1096 1275 08-2-25 08-8-16

V.parahaemolyticus 4992 2358 1097 1276 07-12-6 08-8-16

V.fischeri 3957 2183 1145 1202 08-1-31 08-8-19

V.harveyi 6253 2408 1124 1243 07-11-8 08-8-7

P.profundum 5702 2454 1177 1356 08-7-25 08-8-19

P.aeruginosa 5651 2787 1294 1498 08-5-26 08-8-19

P.aeruginosa_PA14 5977 2292 1171 1240 08-7-25 08-8-16

P.aeruginosa_PA7 6369 2831 1346 1488 08-4-10 08-8-6

P.putida 5516 2471 1143 1341 08-7-25 08-8-19

P.putida_F1 5405 2591 1245 1402 08-8-5 08-8-6

P.putida_GB1 5530 2706 1287 1439 08-5-7 08-8-6

P.putida_W619 5309 2661 1277 1425 08-3-28 08-8-6

P.syringae 5810 2467 1091 1375 08-7-29 08-8-19

P.syringae_B728a 5220 2465 1128 1366 08-7-29 08-8-19

P.syringae_phaseolicola 5436 2579 1228 1447 08-8-6 08-8-19

P.fluorescens 6233 2796 1348 1526 08-8-12 08-8-19

P.fluorescens_PfO1 5833 2695 1274 1439 08-4-16 08-8-19

P.entomophila 5275 2774 1357 1478 08-3-4 08-8-19

P.mendocina 4704 2167 1063 1210 08-4-24 08-8-19

P.stutzeri 4210 1089 569 447 08-6-3 08-8-19

C.japonicus 3816 1768 843 882 08-6-26 08-8-13

P.arcticum 2211 1217 699 692 08-7-30 08-8-19

P.cryohalolentis 2581 1239 727 713 08-1-16 08-8-19

Psychrobacter_PRwf-1 2477 1416 775 757 08-1-10 08-8-6

Acinetobacter_ADP1 3425 1727 991 979 08-7-22 08-8-16

A.baumannii 3470 1705 921 937 08-6-5 08-8-16

A.baumannii_SDF 3664 1416 817 791 08-3-19 08-8-16

A.baumannii_AYE 3890 1840 1035 1014 08-3-24 08-8-16

A.baumannii_ACICU 3845 1794 1002 982 08-6-17 08-8-13

S.oneidensis 4745 1995 935 1001 08-7-31 08-8-19

S.denitrificans 3905 1832 901 950 08-7-31 08-8-16

S.frigidimarina 4199 1755 927 912 08-7-8 08-8-19

S.amazonensis 3785 2025 988 1001 08-8-5 08-8-16

S.baltica 4721 2011 985 1011 08-1-16 08-8-19

S.baltica_OS185 4596 2071 1023 1026 08-8-5 08-8-7

S.baltica_OS195 4859 2107 1028 1040 08-4-11 08-8-7

S.loihica 3993 1670 934 918 08-1-16 08-8-19

S.putrefaciens 4134 1978 951 996 08-8-13 08-8-16

S.sediminis 4666 2025 1011 1058 07-9-26 08-8-19

S.pealeana 4438 2083 1053 1077 08-1-22 08-8-7

Shewanella_MR-4 4084 1818 948 935 08-7-24 08-8-19

Shewanella_MR-7 4186 1748 902 904 08-7-8 08-8-19

Shewanella_ANA3 4519 2207 1073 1059 08-4-21 08-8-19

Shewanella_W3-18-1 4217 1831 914 961 08-1-11 08-8-19

S.halifaxensis 4464 2128 1100 1121 08-4-2 08-8-7

S.woodyi 5096 2149 1101 1103 08-3-28 08-8-7

I.loihiensis 2707 1414 705 733 08-7-24 08-8-19

C.psychrerythraea 5054 1951 1008 1012 07-12-14 08-8-19

P.haloplanktis 3621 1885 991 956 08-1-23 08-8-19

P.atlantica 4397 1822 953 965 08-8-6 08-8-19

S.degradans 4067 1316 761 749 08-7-15 08-8-19

P.ingrahamii 3863 1941 966 1040 08-1-11 08-8-19

M.aquaeolei 4390 1908 934 1021 08-8-1 08-8-19

C.burnetii 2183 902 512 532 08-8-1 08-8-7

C.burnetii_RSA331 2278 932 518 524 08-7-31 08-8-6

C.burnetii_Dugway 2265 951 544 546 08-5-16 08-8-13

L.pneumophila 3002 1385 755 786 08-8-12 08-8-16

L.pneumophila_Lens 3058 1307 714 770 08-8-11 08-8-16

L.pneumophila_Paris 3278 1331 735 785 08-8-11 08-8-16

L.pneumophila_Corby 3259 1395 762 787 08-1-17 08-8-6

M.capsulatus 3052 1415 792 795 08-8-4 08-8-16

F.tularensis 1852 953 580 580 08-7-29 08-8-16

F.tularensis_FSC198 1852 944 576 568 08-7-9 08-8-16

F.tularensis_WY96-3418 1872 976 602 567 08-1-23 08-8-16

F.tularensis_LVS 2020 949 570 570 08-1-30 08-8-16

F.tularensis_OSU18 1932 916 561 555 08-1-16 08-8-16

F.tularensis_FTA 1887 963 530 508 08-4-24 08-8-6

F.tularensis_U112 1781 971 573 556 08-2-1 08-8-19

F.tularensis_FSC147 1750 865 523 501 08-5-13 08-8-6

F.philomiragia 1970 1047 631 608 08-2-18 08-8-6

T.crunogena 2259 1341 671 743 08-1-17 08-8-19

N.oceani 3186 1538 851 863 08-2-26 08-8-19

A.ehrlichei 2940 1347 775 802 08-7-22 08-8-19

H.halophila 2493 1429 730 825 08-6-23 08-8-19

H.chejuensis 6863 2167 1068 1205 08-8-11 08-8-19

C.salexigens 3409 1489 861 871 08-7-15 08-8-19

A.borkumensis 2806 1542 910 864 08-2-1 08-8-19

Marinomonas_MWYL1 4598 2352 1173 1294 08-7-31 08-8-6

A.hydrophila 4287 2103 1143 1156 08-1-11 08-8-19

A.salmonicida 4758 2292 1060 1222 08-8-5 08-8-19

D.nodosus 1351 786 435 429 08-7-24 08-8-19

B.cicadellinicola 651 537 333 370 08-2-1 08-8-2

C.ruddii 213 130 78 103 06-10-25 08-8-19

R.magnifica 1117 754 469 469 08-5-8 08-8-19

V.okutanii 978 717 460 454 08-1-22 08-8-6

N.meningitidis 2225 1210 636 636 08-7-23 08-8-16

N.meningitidis_A 2208 1217 627 638 08-7-23 08-8-16

N.meningitidis_FAM18 2046 1159 629 624 08-1-8 08-8-19

N.meningitidis_053442 2122 1133 638 627 08-7-31 08-8-8

N.gonorrhoeae 2069 1037 600 593 08-7-25 08-8-19

N.gonorrhoeae_NCCP11945 2741 1120 639 609 08-7-15 08-8-15

C.violaceum 4530 2185 1144 1260 08-7-30 08-8-19

R.solanacearum 5193 2446 1264 1372 08-1-9 08-8-19

R.eutropha 6616 2932 1639 1780 08-4-16 08-8-19

R.eutropha_H16 6702 3249 1964 1984 08-7-2 08-8-19

R.metallidurans 6426 2668 1367 1552 08-7-15 08-8-19

C.taiwanensis 1623 602 300 330 08-6-4 08-8-6

B.mallei 5508 2381 1286 1425 08-7-30 08-8-16

B.mallei_SAVP1 5295 2313 1271 1390 08-1-25 08-8-16

B.mallei_NCTC10229 5624 2418 1311 1447 08-5-2 08-8-16

B.mallei_NCTC10247 5966 2483 1358 1486 08-1-25 08-8-16

B.xenovorans 9044 3630 2016 2203 08-4-17 08-8-19

B.vietnamiensis 7863 2836 1450 1656 08-4-17 08-8-19

Burkholderia_383 7826 3515 2146 2153 08-4-23 08-8-19

B.cenocepacia 6632 2074 1252 1323 08-1-17 08-8-19

B.cenocepacia_HI2424 7032 2279 1340 1399 08-1-17 08-8-19

B.cenocepacia_MC0-3 7177 2986 1608 1764 08-3-27 08-8-13

B.cepacia 6724 2294 1309 1427 08-2-7 08-8-19

B.ambifaria_MC40-6 6886 2768 1513 1630 08-4-8 08-8-6

B.multivorans 6373 2929 1588 1690 08-5-15 08-8-6

B.multivorans_T 6307 2936 1585 1689 08-7-31 08-8-12

B.pseudomallei 5935 2805 1477 1664 07-12-25 08-8-16

B.pseudomallei_1710b 6420 2914 1591 1742 08-1-15 08-8-19

B.pseudomallei_1106a 7263 2791 1537 1668 08-1-17 08-8-19

B.pseudomallei_668 7307 2829 1529 1714 08-6-5 08-8-19

B.thailandensis 5714 2630 1413 1579 07-4-5 08-8-19

B.phymatum 7899 3235 1776 1895 08-6-5 08-8-13

Polynucleobacter 2132 1178 679 685 08-7-25 08-8-19

P.necessarius 1783 952 574 553 08-7-31 08-8-6

B.pertussis 3867 1822 874 1108 08-8-5 08-8-19

B.parapertussis 4467 2127 1018 1291 08-7-30 08-8-19

B.bronchiseptica 5072 2351 1138 1448 08-7-25 08-8-19

B.petrii 5091 2399 1208 1384 08-8-14 08-8-15

B.avium 3510 1876 962 1107 08-5-13 08-8-7

R.ferrireducens 4555 2190 1138 1297 08-1-16 08-8-19

Polaromonas 5626 2249 1196 1358 08-7-15 08-8-19

P.naphthalenivorans 5064 2062 1083 1176 08-6-23 08-8-19

A.avenae 4858 2045 1036 1204 08-6-23 08-8-16

Acidovorax_JS42 4383 1889 983 1092 08-4-17 08-8-19

V.eiseniae 5109 2321 1165 1529 08-6-23 08-8-19

D.acidovorans 6153 2606 1313 1504 08-5-8 08-8-7

M.petroleiphilum 4546 1924 1077 1130 08-5-14 08-8-19

H.arsenicoxydans 3391 1755 911 968 08-1-7 08-8-19

M.massiliensis 3750 1905 942 1009 08-7-31 08-8-7

L.cholodnii 4445 2201 1177 1280 08-4-1 08-8-7

N.europaea 2620 1330 690 742 08-8-6 08-8-15

N.eutropha 2687 1178 669 705 08-8-15 08-8-19

N.multiformis 2876 1360 721 777 06-7-25 08-8-19

Azoarcus_EbN1 4673 1741 981 1032 08-7-24 08-8-19

Azoarcus_BH72 4058 2292 1256 1287 08-6-25 08-8-19

D.aromatica 4283 1928 1010 1056 08-7-24 08-8-19

T.denitrificans 2879 1476 769 799 08-4-22 08-8-19

M.flagellatus 2822 1521 779 837 08-4-17 08-8-7

H.pylori 1630 929 498 570 08-7-23 08-8-8

H.pylori_J99 1535 864 448 543 08-7-23 08-8-19

H.pylori_HPAG1 1586 969 554 616 08-1-11 08-8-16

H.pylori_Shi470 1609 947 529 579 08-8-4 08-8-16

H.hepaticus 1915 936 515 580 08-8-4 08-8-14

H.acinonychis 1660 902 503 536 08-3-14 08-8-8

W.succinogenes 2091 1123 598 672 08-1-10 08-8-19

T.denitrificans_ATCC33889 2163 1058 595 644 08-7-22 08-8-17

C.jejuni 1708 1039 555 634 08-7-23 08-8-17

C.jejuni_RM1221 1940 1010 547 622 08-1-9 08-8-17

C.jejuni_81-176 1812 1065 569 645 08-1-10 08-8-17

C.jejuni_81116 1681 1041 557 630 07-9-25 08-8-3

C.jejuni_doylei 2040 1001 547 610 07-9-12 08-8-3

C.fetus 1820 1150 613 673 08-8-1 08-8-17

C.curvus 2114 1075 581 625 08-1-8 08-8-7

C.hominis_BAA-381 1804 890 508 524 07-9-11 08-8-7

C.concisus 2195 999 539 579 07-9-19 08-8-7

A.butzleri 2333 1161 615 685 08-1-15 08-8-7

Nitratiruptor_SB155-2 1911 1027 582 621 07-7-30 08-8-7

Sulfurovum_NBC37-1 2519 1118 650 639 08-1-23 08-8-7

G.sulfurreducens 3528 1464 743 862 08-7-30 08-8-17

G.metallireducens 3635 1568 891 908 08-4-16 08-8-16

G.uraniumreducens 4489 1672 890 954 08-5-16 08-8-17

G.lovleyi 3780 1507 839 861 08-6-10 08-8-14

P.carbinolicus 3450 1519 819 891 08-1-23 08-8-15

P.propionicus 3913 1449 772 861 08-8-4 08-8-12

D.vulgaris 3634 1528 743 872 08-7-18 08-8-8

D.vulgaris_DP4 3190 1538 750 883 08-2-1 08-8-8

D.desulfuricans 3865 1781 864 924 08-7-31 08-8-8

L.intracellularis 1388 849 419 484 08-1-11 08-8-8

B.bacteriovorus 3629 1407 830 791 07-12-21 08-8-8

D.psychrophila 3322 1405 713 827 08-7-23 08-8-17

D.oleovorans 3323 1309 761 739 07-12-19 08-8-7

A.dehalogenans 4419 1613 897 927 08-5-1 08-8-17

Anaeromyxobacter_Fw109-5 4562 1678 967 935 08-1-21 08-8-7

M.xanthus 7456 1592 1011 887 08-3-4 08-8-17

S.cellulosum 9703 2091 1264 1179 07-12-19 08-8-8

S.aciditrophicus 3219 1303 813 809 07-12-18 08-8-17

S.fumaroxidans 4162 1477 809 876 08-7-2 08-8-17

R.prowazekii 886 571 277 321 08-1-9 08-8-7

R.typhi 919 579 302 336 08-1-9 08-8-8

R.conorii 1414 639 329 362 08-1-9 08-8-8

R.felis 1551 654 349 366 08-8-6 08-8-15

R.bellii 1469 619 339 347 08-2-1 08-8-15

R.bellii_OSU85-389 1512 616 326 326 07-11-8 08-8-7

R.akari 1294 563 299 313 08-8-4 08-8-7

R.canadensis 1129 547 295 308 08-1-28 08-8-7

R.rickettsii 1381 570 306 312 07-11-5 08-8-7

R.rickettsii_Iowa 1495 572 306 318 08-1-21 08-8-7

R.massiliae 1436 575 301 313 07-11-21 08-8-7

O.tsutsugamushi 2216 460 236 259 08-7-30 08-8-14

O.tsutsugamushi_Ikeda 2005 536 265 275 08-6-5 08-8-14

Wolbachia_Mel 1309 560 304 365 08-7-24 08-8-7

Wolbachia_Bma 940 519 291 346 08-1-11 08-8-7

W.pipientis 1423 566 312 334 08-6-23 08-8-14

A.marginale 1005 563 333 387 07-12-20 08-8-7

A.phagocytophilum 1411 553 314 369 08-7-22 08-8-7

E.ruminantium 961 549 327 376 08-1-10 08-8-7

E.ruminantium_Welgevonden 997 561 330 378 08-6-25 08-8-7

E.ruminantium_Gardel 989 529 313 366 08-1-24 08-8-7

E.canis 984 558 326 373 08-4-11 08-8-7

E.chaffeensis 1158 554 318 369 08-7-23 08-8-7

N.sennetsu 973 487 272 328 08-1-30 08-8-7

P.ubique 1389 886 566 592 08-1-21 08-8-8

M.loti 7333 2932 1317 1668 08-8-4 08-8-17

Mesorhizobium_BNC1 4684 1605 838 984 08-7-9 08-8-17

P.lavamentivorans 3707 1737 999 1012 07-9-10 08-8-7

S.meliloti 6276 2995 1396 1651 08-7-7 08-8-17

S.medicae 6587 2852 1393 1649 08-5-8 08-8-7

A.tumefaciens 5459 2536 1132 1511 08-7-25 08-8-17

A.tumefaciens_C 5360 2500 1127 1491 06-4-28 08-8-17

R.etli 6093 2947 1536 1751 08-1-28 08-8-17

R.etli_CIAT652 6171 2592 1287 1525 08-6-23 08-8-14

R.leguminosarum 7348 3661 1908 2164 08-8-6 08-8-17

B.melitensis 3264 2030 1116 1255 08-1-7 08-8-7

B.melitensis_Abortus 3418 1695 909 1030 08-1-10 08-8-9

B.abortus 3356 1616 845 995 08-1-7 08-8-9

B.abortus_S19 3133 1745 903 1041 08-6-19 08-8-14

B.suis 3451 1688 857 1020 08-7-23 08-8-7

B.suis_ATCC23445 3429 1710 876 1010 08-5-15 08-8-7

B.ovis 3198 1649 853 973 08-2-13 08-8-7

B.canis 3424 1740 900 1043 08-4-9 08-8-7

O.anthropi 4932 2422 1116 1377 08-5-8 08-8-7

B.japonicum 8373 2977 1538 1857 08-7-30 08-8-17

Bradyrhizobium_ORS278 6818 2802 1790 1458 08-7-23 08-8-17

Bradyrhizobium_BTAi1 7810 3205 1855 2031 08-5-1 08-8-17

R.palustris 4898 2333 1233 1442 08-8-6 08-8-17

R.palustris_HaA2 4772 2112 1105 1326 08-1-28 08-8-17

R.palustris_BisB18 5016 2031 1079 1250 08-1-31 08-8-17

R.palustris_BisB5 4492 1952 1036 1181 08-1-30 08-8-17

R.palustris_BisA53 4972 2369 1232 1406 08-7-4 08-8-17

R.palustris_TIE-1 5383 2337 1246 1436 08-6-26 08-8-14

N.winogradskyi 3198 1440 791 812 08-8-8 08-8-17

N.hamburgensis 4741 1283 748 786 08-1-16 08-8-17

B.henselae 1665 850 440 499 08-1-8 08-8-7

B.quintana 1356 794 421 477 08-1-8 08-8-7

B.bacilliformis 1375 813 425 478 08-3-13 08-8-7

B.tribocorum 2171 954 487 529 07-12-28 08-8-7

X.autotrophicus 5155 2260 1147 1334 07-9-11 08-8-7

A.caulinodans 4782 2361 1170 1439 08-8-5 08-8-7

M.extorquens 4956 1987 1071 1168 08-4-10 08-8-7

M.radiotolerans 6626 2433 1282 1484 08-3-27 08-8-7

Methylobacterium_4-46 7145 2559 1325 1556 08-3-31 08-8-7

B.indica 3982 1752 972 997 08-4-15 08-8-14

C.crescentus 3819 1672 868 940 08-7-23 08-8-17

Caulobacter_K31 5515 2109 1184 1179 08-5-2 08-8-7

S.pomeroyi 4348 1957 1086 1197 08-1-9 08-8-16

Silicibacter_TM1040 3956 1841 1028 1120 08-4-21 08-8-16

R.sphaeroides 4370 2200 1126 1331 08-5-9 08-8-17

R.sphaeroides_ATCC17029 4253 1276 800 844 08-4-4 08-8-17

R.sphaeroides_ATCC17025 4465 2055 1050 1193 07-9-7 08-8-7

Jannaschia_CCS1 4336 1403 878 900 08-5-9 08-8-17

R.denitrificans 4191 2320 1327 1398 08-7-9 08-8-17

P.denitrificans 5177 2163 1041 1290 08-6-25 08-8-17

D.shibae 4271 1973 1049 1170 08-1-15 08-8-7

M.maris 3133 1108 681 703 08-4-24 08-8-14

H.neptunium 3568 1264 808 770 08-8-5 08-8-17

Z.mobilis 2058 970 587 613 08-7-25 08-8-13

N.aromaticivorans 4031 1299 748 785 08-4-18 08-8-17

S.alaskensis 3260 1264 683 727 08-4-17 08-8-17

S.wittichii 5455 2131 1329 1276 08-4-24 08-8-7

E.litoralis 3056 1062 603 609 08-1-24 08-8-17

G.oxydans 2731 1255 762 750 08-1-18 08-8-13

G.bethesdensis 2498 1284 880 810 08-7-8 08-8-17

A.cryptum 3692 1800 1019 1080 08-6-20 08-8-7

G.diazotrophicus 3930 1715 917 962 07-12-14 08-8-7

R.rubrum 3920 1814 1091 1089 08-4-17 08-8-17

M.magneticum 4611 1543 825 902 08-7-30 08-8-17

Magnetococcus_MC1 3815 1320 705 743 08-6-30 08-8-16

A.bacterium 4834 1357 831 821 08-7-14 08-8-14

S.usitatus 8002 1196 906 833 08-8-6 08-8-17

S.wolfei 2642 881 490 523 08-7-8 08-8-17

C.saccharolyticus 2829 1244 614 666 08-7-31 08-8-7

B.subtilis 4225 2125 1004 1311 08-7-30 08-8-17

B.halodurans 4171 2139 946 1149 08-1-8 08-8-17

B.anthracis 5630 2256 1111 1257 08-7-23 08-8-17

B.anthracis_Ames0581 5965 2236 1102 1250 08-7-25 08-8-17

B.anthracis_A2012 5874 2153 1086 1200 05-3-8 08-8-17

B.anthracis_Sterne 5415 2324 1143 1297 08-7-25 08-8-17

B.cereus 5502 2430 1297 1326 08-7-25 08-8-17

B.cereus_ATCC10987 6014 2349 1189 1294 08-7-25 08-8-17

B.cereus_ZK 5796 2549 1489 1535 08-1-8 08-8-17

B.cereus_NVH 4176 2020 1077 1116 07-7-31 08-8-8

B.thuringiensis 5343 2529 1351 1419 08-1-8 08-8-17

B.thuringiensis_AlHakam 4945 2496 1348 1376 08-5-15 08-8-17

B.weihenstephanensis 5983 2545 1403 1414 08-5-7 08-8-8

B.licheniformis 4337 2067 1002 1149 08-7-31 08-8-17

B.licheniformis_DSM13 4289 1971 1061 1185 08-8-11 08-8-17

B.clausii 4204 1938 1060 1197 08-7-23 08-8-17

B.amyloliquefaciens 3813 1983 1015 1086 08-7-30 08-8-8

B.pumilus 3825 1900 959 1045 07-10-2 08-8-8

O.iheyensis 3594 1775 858 1031 08-4-22 08-8-17

G.kaustophilus 3654 1640 924 1035 08-7-30 08-8-17

G.thermodenitrificans 3590 1814 926 1039 08-6-3 08-8-17

L.sphaericus 4972 1930 985 1074 08-3-17 08-8-8

E.sibiricum 3155 1534 813 847 08-4-10 08-8-8

S.aureus_N315 2700 1420 704 812 08-1-7 08-8-17

S.aureus_Mu50 2809 1373 696 796 07-12-20 08-8-17

S.aureus_Mu3 2776 1465 774 856 08-5-16 08-8-9

S.aureus_MW2 2712 1375 686 809 08-1-10 08-8-17

S.aureus_MRSA252 2845 1366 693 800 08-1-10 08-8-17

S.aureus_MSSA476 2747 1344 682 786 07-12-17 08-8-17

S.aureus_COL 2727 1281 694 784 07-12-13 08-8-17

S.aureus_RF122 2663 1346 698 790 08-4-4 08-8-17

S.aureus_USA300 2692 1401 762 832 08-4-4 08-8-17

S.aureus_USA300_TCH1516 2835 1379 752 813 07-12-10 08-8-9

S.aureus_NCTC8325 2969 1362 703 791 08-7-16 08-8-17

S.aureus_JH9 2847 1466 778 862 08-1-15 08-8-9

S.aureus_JH1 2906 1462 778 861 08-1-10 08-8-9

S.aureus_Newman 2687 1433 767 843 08-4-18 08-8-9

S.epidermidis 2561 1277 657 748 07-12-18 08-8-17

S.epidermidis_RP62A 2668 1211 676 742 08-1-18 08-8-17

S.haemolyticus 2753 1243 660 727 08-1-21 08-8-17

S.saprophyticus 2595 1295 675 734 08-7-22 08-8-17

L.monocytogenes 2940 1558 794 938 08-8-11 08-8-17

L.monocytogenes_F2365 2934 1514 779 912 08-8-14 08-8-17

L.innocua 3145 1559 764 912 08-8-14 08-8-17

L.welshimeri 2864 1530 810 914 08-8-6 08-8-17

L.lactis 2425 1189 605 653 07-7-11 08-8-8

L.lactis_SK11 2742 1144 613 638 08-4-25 08-8-8

L.lactis_MG1363 2597 1266 710 721 08-6-19 08-8-14

S.pyogenes 1811 996 500 563 08-8-13 08-8-17

S.pyogenes_MGAS5005 1950 1099 631 635 08-1-31 08-8-17

S.pyogenes_M18 1924 990 525 574 08-8-13 08-8-17

S.pyogenes_M3 1951 1007 526 582 08-8-13 08-8-17

S.pyogenes_SSI1 1933 993 520 577 08-8-13 08-8-17

S.pyogenes_MGAS10270 2067 1060 631 616 08-2-4 08-8-17

S.pyogenes_MGAS10750 2060 1057 626 612 08-3-4 08-8-17

S.pyogenes_MGAS2096 1979 1063 637 606 08-4-22 08-8-17

S.pyogenes_MGAS9429 1962 1034 608 590 08-7-31 08-8-17

S.pyogenes_Manfredo 1907 1036 560 598 08-1-30 08-8-17

S.pyogenes_MGAS10394 1971 1112 625 658 08-8-13 08-8-17

S.pyogenes_MGAS6180 1977 1085 609 633 08-1-21 08-8-17

S.pneumoniae 2303 1206 622 688 08-8-12 08-8-17

S.pneumoniae_R6 2116 1200 634 698 08-8-12 08-8-17

S.pneumoniae_D39 2069 1169 629 683 08-7-30 08-8-17

S.pneumoniae_Hungary19A_6 2402 1086 594 650 08-4-1 08-8-17

S.pneumoniae_CGSP14 2276 1041 562 620 08-4-15 08-8-17

S.pneumoniae_G54 2186 1188 635 681 08-7-28 08-8-14

S.agalactiae 2276 1128 555 649 07-12-11 08-8-17

S.agalactiae_NEM316 2235 1119 565 642 07-12-12 08-8-17

S.agalactiae_A909 2136 1127 571 641 08-1-17 08-8-17

S.mutans 2042 1088 568 642 07-12-12 08-8-17

S.thermophilus_CNRZ 2000 1020 542 574 07-12-12 08-8-17

S.thermophilus_LMG 1974 1029 548 584 07-12-17 08-8-17

S.thermophilus_LMD9 2009 970 506 539 08-1-17 08-8-17

S.sanguinis 2348 1155 664 683 08-1-21 08-8-17

S.suis_05ZYH33 2254 974 537 580 08-1-21 08-8-17

S.suis_98HAH33 2253 1006 561 587 08-1-17 08-8-17

S.gordonii 2150 1112 603 638 07-11-7 08-8-17

L.plantarum 3185 1537 889 870 07-6-28 08-8-16

L.johnsonii 1918 912 443 508 07-1-29 08-8-7

L.acidophilus 1936 920 491 535 08-1-29 08-8-9

L.sakei 1963 1079 570 584 08-1-11 08-8-7

L.salivarius 2184 1045 612 599 08-8-14 08-8-16

L.delbrueckii 2217 802 425 451 08-8-14 08-8-16

L.delbrueckii_BAA-365 2040 785 400 438 08-1-17 08-8-7

L.brevis 2351 1073 533 567 08-2-18 08-8-7

L.casei 2929 1309 670 749 08-1-21 08-8-17

L.casei_BL23 3044 1459 744 836 08-6-30 08-8-14

L.gasseri 1898 861 434 476 08-2-18 08-8-7

L.reuteri 2027 1025 550 548 07-9-28 08-8-7

L.reuteri_K 1901 1046 560 560 08-7-28 08-8-14

L.helveticus 1838 845 444 468 07-12-7 08-8-7

L.fermentum 1912 1071 565 566 08-7-30 08-8-8

P.pentosaceus 1847 638 326 355 08-7-2 08-8-15

E.faecalis 3413 1379 691 810 06-5-24 08-8-17

O.oeni 1864 813 412 488 08-7-3 08-8-7

L.mesenteroides 2108 1019 559 610 08-7-2 08-8-8

L.citreum 1905 1037 577 587 08-3-21 08-8-8

S.thermophilum 3455 1510 730 909 08-1-9 08-8-7

C.acetobutylicum 4022 1605 753 895 06-5-24 08-8-17

C.perfringens 2849 1335 681 751 08-7-30 08-8-17

C.perfringens_ATCC13124 3017 1198 672 661 08-2-4 08-8-17

C.perfringens_SM101 2722 1078 603 600 08-5-30 08-8-17

C.tetani 2506 1277 682 716 07-6-28 08-8-17

C.novyi 2427 1057 580 611 08-1-15 08-8-3

C.thermocellum 3305 1097 620 642 08-4-11 08-8-3

C.difficile 3982 1429 765 836 08-8-15 08-8-17

C.botulinum 3795 1610 815 867 08-2-15 08-8-7

C.botulinum_A_ATCC19397 3696 1603 814 860 08-1-23 08-8-7

C.botulinum_A_Hall 3569 1587 808 855 08-5-8 08-8-7

C.botulinum_A3_LochMaree 4105 1628 805 874 08-3-27 08-8-14

C.botulinum_B_Eklund 3647 1516 797 842 08-5-13 08-8-8

C.botulinum_B1 3975 1649 834 878 08-3-27 08-8-7

C.botulinum_F 3856 1607 806 856 07-9-11 08-8-7

C.beijerinckii 5243 2126 1104 1239 08-5-12 08-8-8

C.kluyveri 3994 1572 781 856 08-2-25 08-8-7

C.phytofermentans 4023 1630 808 910 08-4-2 08-8-7

A.metalliredigens 4941 1842 906 1029 08-8-8 08-8-10

A.oremlandii 2991 1391 669 715 08-7-30 08-8-8

C.hydrogenoformans 2707 1186 648 694 08-7-25 08-8-3

D.hafniense 5137 2086 959 1079 07-12-18 08-8-17

D.reducens 3423 1437 715 809 07-4-11 08-8-17

P.thermopropionicum 2977 1030 536 594 08-4-10 08-8-3

D.audaxviator 2295 1076 565 623 08-5-1 08-8-3

H.modesticaldum 3138 1292 690 733 08-6-30 08-8-8

F.magna 1873 902 448 488 08-7-30 08-8-7

T.tengcongensis 2721 1316 659 760 07-12-12 08-8-17

Thermoanaerobacter_X514 2479 1280 652 735 08-4-1 08-8-7

T.pseudethanolicus 2366 1215 620 701 08-7-31 08-8-7

M.thermoacetica 2615 1217 638 714 08-4-17 08-8-3

M.genitalium 525 334 170 213 08-7-29 08-8-7

M.pneumoniae 733 327 161 200 08-4-22 08-8-7

M.pulmonis 815 451 233 270 07-12-26 08-8-7

M.penetrans 1069 458 254 285 08-1-4 08-8-7

M.gallisepticum 781 380 188 232 08-7-30 08-8-7

M.mycoides 1052 472 270 288 08-1-4 08-8-7

M.mobile 667 399 226 243 08-4-2 08-8-15

M.hyopneumoniae 727 350 186 230 08-1-7 08-8-3

M.hyopneumoniae_J 709 352 187 225 08-8-4 08-8-15

M.hyopneumoniae_7448 711 356 190 227 08-8-4 08-8-15

M.synoviae 728 368 192 226 08-7-23 08-8-7

M.capricolum 867 428 240 262 08-1-18 08-8-7

M.agalactiae 792 373 196 211 08-4-16 08-8-7

M.arthritidis 671 325 161 187 08-7-2 08-8-14

U.urealyticum 653 347 170 208 08-1-10 08-8-7

U.parvum 641 315 160 180 08-8-5 08-8-7

Phytoplasma_OY 793 298 131 182 08-1-10 08-8-3

Phytoplasma_AYWB 730 305 141 183 08-1-28 08-8-3

Phytoplasma_mali 536 255 121 154 08-7-18 08-8-14

A.laidlawii 1433 678 356 366 08-3-18 08-8-8

M.florum 717 397 208 243 08-4-7 08-8-7

M.tuberculosis 4048 1801 1100 1057 08-4-8 08-8-17

M.tuberculosis_CDC1551 4293 1633 963 968 08-7-24 08-8-17

M.tuberculosis_H37Ra 4084 1702 1034 975 08-5-12 08-8-17

M.tuberculosis_F11 3998 1972 1258 1102 08-1-17 08-8-8

M.bovis 4003 1855 1271 1093 08-8-12 08-8-17

M.bovis_BCG 4036 1944 1299 1113 08-6-20 08-8-17

M.leprae 2770 842 531 548 08-4-8 08-8-8

M.avium_paratuberculosis 4399 1544 985 1005 08-1-10 08-8-17

M.avium_104 5313 1934 1318 1232 06-12-5 08-8-8

M.smegmatis 6938 1932 1398 1289 06-12-5 08-8-17

M.ulcerans 4981 1421 938 928 08-6-26 08-8-17

M.vanbaalenii 6136 1574 1057 1019 08-1-10 08-8-17

M.gilvum 5669 1648 1034 1058 08-4-24 08-8-17

M.abscessus 4991 1868 1242 1168 08-7-23 08-8-8

Mycobacterium_MCS 5698 1520 1037 985 08-7-23 08-8-17

Mycobacterium_KMS 6079 1115 840 797 08-6-25 08-8-17

Mycobacterium_JLS 5845 1555 1093 1009 08-4-9 08-8-17

M.marinum 5570 2153 1466 1287 08-4-24 08-8-14

C.glutamicum 3073 1368 756 836 08-1-7 08-8-17

C.glutamicum_B 3138 1244 761 818 08-7-23 08-8-17

C.glutamicum_R 3156 1341 722 812 08-1-17 08-8-17

C.efficiens 3020 1246 691 754 07-12-28 08-8-15

C.diphtheriae 2389 1081 594 661 08-8-8 08-8-10

C.jeikeium 2181 1024 613 639 08-1-10 08-8-17

C.urealyticum 2084 1025 601 616 08-4-9 08-8-8

N.farcinica 6000 1656 1018 1069 08-1-21 08-8-17

Rhodococcus_RHA1 9221 2662 2045 1874 08-7-24 08-8-17

S.coelicolor 8301 2226 1188 1299 08-8-8 08-8-17

S.avermitilis 7762 2200 1177 1327 07-12-11 08-8-17

S.griseus 7224 2195 1213 1319 08-4-15 08-8-14

T.whipplei 862 510 314 380 08-7-22 08-8-8

T.whipplei_S 839 521 310 375 08-7-25 08-8-8

L.xyli 2376 914 517 586 08-8-8 08-8-17

C.michiganensis 3168 1347 743 792 08-1-31 08-8-8

C.michiganensis_sepedonicus 3287 0 0 737 08-6-3 08-8-14

Arthrobacter_FB24 4605 795 579 563 08-7-1 08-8-17

A.aurescens 4780 1954 1092 1144 08-8-13 08-8-17

R.salmoninarum 3558 1470 801 849 07-12-27 08-8-8

K.rhizophila 2414 1166 689 706 08-5-12 08-8-17

P.acnes 2368 1177 705 773 08-7-25 08-8-8

Nocardioides_JS614 5026 1345 927 910 08-7-23 08-8-17

T.fusca 3184 1275 761 811 08-4-16 08-8-8

Frankia_CcI3 4618 1564 955 918 08-4-22 08-8-7

Frankia_EAN1pec 7377 2051 1285 1258 08-1-10 08-8-7

F.alni 6786 1550 1113 1005 08-2-15 08-8-17

A.cellulolyticus 2217 1067 623 689 08-1-10 08-8-7

K.radiotolerans 4778 1662 918 953 08-7-25 08-8-8

S.erythraea 7264 2635 1692 1663 08-4-22 08-8-17

S.tropica 4654 1478 878 825 08-7-31 08-8-15

S.arenicola 5172 1733 1080 1109 08-7-30 08-8-7

B.longum 1800 871 480 516 08-7-23 08-8-8

B.longum_DJO10A 2075 544 399 375 08-6-10 08-8-14

B.adolescentis 1701 775 442 485 08-1-17 08-8-17

R.xylanophilus 3281 1073 717 730 08-7-14 08-8-16

F.nucleatum 2129 1160 639 666 07-12-18 08-8-13

R.baltica 7405 1734 1175 1029 07-12-20 08-8-1