KEGG Organisms
Eukaryotes: 72+27+49 Bacteria: 663 Archaea: 52
1995: 2 1996: 2 1997: 8 1998: 7 1999: 6 2000: 18 2001: 28 2002: 38 2003: 46 2004: 67 2005: 90 2006: 138 2007: 191 2008: 91
Eukaryotes
Category
Species
Com-
pleted
Source
Animals
Vertebrates
Mammals
Homo sapiens (human)
hsa
RefSeq
Pan troglodytes (chimpanzee)
ptr
RefSeq
Macaca mulatta (rhesus monkey)
mcc
RefSeq
Mus musculus (mouse)
mmu
RefSeq
Rattus norvegicus (rat)
rno
RefSeq
Canis familiaris (dog)
cfa
RefSeq
Bos taurus (cow)
bta
RefSeq
Sus scrofa (pig)
ssc
RefSeq
Equus caballus (horse)
decb
RefSeq
Monodelphis domestica (opossum)
mdo
RefSeq
Ornithorhynchus anatinus (platypus)
oaa
RefSeq
Birds
Gallus gallus (chicken)
gga
RefSeq
Amphibians
Xenopus laevis (African clawed frog)
xla
RefSeq
Xenopus tropicalis (western clawed frog)
xtr
RefSeq
Fishes
Danio rerio (zebrafish)
dre
RefSeq
Fugu rubripes (Japanese puffer fish)
dfru
Ensembl
Tetraodon nigroviridis (green spotted puffer)
dtni
GenBank
Oryzias latipes (Japanese medaka)
dola
Ensembl
Ascidians
Ciona intestinalis (sea squirt)
dcin
JGI
Ciona savignyi (EST)
ecsv
dbEST
Molgula tectiformis (EST)
emte
dbEST
Echinoderms
Strongylocentrotus purpuratus (purple sea urchin)
spu
RefSeq
Strongylocentrotus purpuratus (purple sea urchin) (EST)
espu
dbEST
Cnidarians
Nematostella vectensis (sea anemone)
nve
RefSeq
Insects
Drosophila melanogaster (fruit fly)
dme
2000
RefSeq
Drosophila pseudoobscura
dpo
RefSeq
Drosophila ananassae
ddan
FlyBase
Drosophila erecta
dder
FlyBase
Drosophila grimshawi
ddgr
FlyBase
Drosophila mojavensis
ddmo
FlyBase
Drosophila persimilis
ddpe
FlyBase
Drosophila sechellia
ddse
FlyBase
Drosophila simulans
ddsi
FlyBase
Drosophila virilis
ddvi
FlyBase
Drosophila willistoni
ddwi
FlyBase
Drosophila yakuba
ddya
FlyBase
Anopheles gambiae (mosquito)
aga
RefSeq
Aedes aegypti (yellow fever mosquito)
aag
RefSeq
Apis mellifera (honey bee)
dame
Ensembl
Bombyx mori (silkmoth)
dbmo
Beijing
Tribolium castaneum (red flour beetle)
tca
RefSeq
Nematodes
Caenorhabditis elegans (nematode)
cel
1998
RefSeq
Caenorhabditis briggsae
cbr
RefSeq
Brugia malayi (filaria)
bmy
RefSeq
Flatworms
Schistosoma japonicum (fluke) (EST)
esja
dbEST
Plants
Dicotyledons
mustard family
Arabidopsis thaliana (thale cress)
ath
2000
RefSeq
Arabidopsis thaliana (thale cress) (EST)
eath
dbEST
Brassica napus (rape) (EST)
ebna
dbEST
rue family
Citrus sinensis (Valencia orange) (EST)
ecsi
dbEST
mallow family
Gossypium arboreum (cotton) (EST)
egar
dbEST
Gossypium raimondii (EST)
egra
dbEST
Gossypium hirsutum (upland cotton) (EST)
eghi
dbEST
pea family
Glycine max (soybean) (EST)
egma
dbEST
Lotus japonicus (lotus) (EST)
elja
dbEST
Medicago truncatula (barrel medic) (EST)
emtr
dbEST
willow family
Populus trichocarpa (black cottonwood)
dpop
JGI
Populus trichocarpa (black cottonwood) (EST)
epop
dbEST
Populus tremula (European aspen) (EST)
eptp
dbEST
daisy family
Helianthus annuus (sunflower) (EST)
ehan
dbEST
Lactuca sativa (lettuce) (EST)
elst
dbEST
Lactuca perennis (blue lettuce) (EST)
elpe
dbEST
Lactuca saligna (willowleaf lettuce) (EST)
elsi
dbEST
Lactuca virosa (wild lettuce) (EST)
elvi
dbEST
Zinnia elegans (zinnia) (EST)
ezel
dbEST
nightshade family
Solanum lycopersicum (tomato) (EST)
esly
dbEST
Solanum tuberosum (potato) (EST)
estu
dbEST
Capsicum annuum (chile pepper) (EST)
ecan
dbEST
Nicotiana tabacum (tabacco) (EST)
enta
dbEST
Nicotiana benthamiana (EST)
enbe
dbEST
grape family
Vitis vinifera (wine grape)
dvvi
Genoscope
Vitis vinifera (wine grape) (EST)
evvi
dbEST
goosefoot family
Beta vulgaris (beet) (EST)
ebvl
dbEST
supurge family
Euphorbia esula (spurge) (EST)
eees
dbEST
Manihot esculent (tapioca) (EST)
emec
dbEST
morning-glory family
Ipomoea nil (Japanese morning glory) (EST)
eini
dbEST
rose family
Prunus persica (peach) (EST)
epps
dbEST
Monocotyledons
grass family
Oryza sativa japonica (Japanese rice)
osa
RefSeq
Oryza sativa (rice) (EST)
eosa
dbEST
Oryza sativa japonica (Japanese rice) (EST)
eosj
dbEST
Oryza sativa indica (Indian rice) (EST)
eosi
dbEST
Hordeum vulgare (barley) (EST)
ehvu
dbEST
Triticum aestivum (wheat) (EST)
etae
dbEST
Zea mays (maize) (EST)
ezma
dbEST
Saccharum officinarum (sugarcane) (EST)
esof
dbEST
Sorghum bicolor (sorghum) (EST)
esbi
dbEST
Sorghum propinquum (EST)
espp
dbEST
Festuca arundinacea (tall fescue) (EST)
efar
dbEST
lily family
Allium cepa (onion) (EST)
eacp
dbEST
Other seed plants
pine family
Pinus taeda (loblolly pine) (EST)
epta
dbEST
Pinus pinaster (maritime pine) (EST)
eppi
dbEST
Picea glauca (white spruce) (EST)
epgl
dbEST
Picea sitchensis (sitka spruce) (EST)
epsi
dbEST
Mosses
Physcomitrella patens (EST)
eppa
dbEST
Physcomitrella patens subsp. patens
ppp
RefSeq
Physcomitrella patens subsp. patens (EST)
eppp
dbEST
Red algae
Cyanidioschyzon merolae
cme
2004
U Tokyo
Green algae
Ostreococcus lucimarinus
olu
RefSeq
Ostreococcus tauri
dota
Ghent
Chlamydomonas reinhardtii
cre
RefSeq
Fungi
Ascomycetes
Saccharomycetes
Saccharomyces cerevisiae
sce
1997
RefSeq
Saccharomyces paradoxus
dspd
SGD
Saccharomyces mikatae
dsmi
SGD
Saccharomyces bayanus
dsba
SGD
Ashbya gossypii (Eremothecium gossypii)
ago
2004
RefSeq
Kluyveromyces lactis
kla
RefSeq
Kluyveromyces waltii
dkwa
Nature
Debaryomyces hansenii
dha
RefSeq
Pichia stipitis
pic
RefSeq
Vanderwaltozyma polyspora
vpo
RefSeq
Candida albicans
cal
2004
RefSeq
Candida glabrata
cgr
RefSeq
Yarrowia lipolytica
yli
RefSeq
Schizosaccharomycetes
Schizosaccharomyces pombe
spo
2002
RefSeq
Sordariomycete
Neurospora crassa
ncr
RefSeq
Podospora anserina
pan
RefSeq
Magnaporthe grisea
mgr
RefSeq
Fusarium graminearum
fgr
RefSeq
Eurotiales
Aspergillus nidulans
ani
RefSeq
Aspergillus fumigatus
afm
RefSeq
Aspergillus oryzae
aor
RefSeq
Aspergillus niger
ang
RefSeq
Basidiomycetes
Cryptococcus neoformans JEC21
cne
2005
RefSeq
Cryptococcus neoformans B-3501A
cnb
RefSeq
Phanerochaete chrysosporium
dpch
JGI
Laccaria bicolor
lbc
RefSeq
Ustilago maydis
uma
RefSeq
Malassezia globosa
mgl
RefSeq
Microsporidian
Encephalitozoon cuniculi
ecu
2002
RefSeq
Protists
Choanoflagellate
Monosiga brevicollis
mbr
RefSeq
Diplomonad
Giardia lamblia
gla
RefSeq
Cellular slime mold
Dictyostelium discoideum
ddi
2005
RefSeq
Alveolates
Apicomplexa
Plasmodium falciparum 3D7
pfa
2002
RefSeq
Plasmodium falciparum Dd2
pfd
Broad
Plasmodium falciparum HB3
pfh
Broad
Plasmodium yoelii
pyo
RefSeq
Plasmodium knowlesi
dpkn
Sanger
Cryptosporidium parvum
cpv
2004
RefSeq
Cryptosporidium hominis
cho
2004
RefSeq
Theileria annulata
tan
2005
RefSeq
Theileria parva
tpv
2005
RefSeq
Ciliates
Tetrahymena thermophila
tet
RefSeq
Paramecium tetraurelia
ptm
RefSeq
Euglenozoa
Trypanosoma brucei
tbr
RefSeq
Trypanosoma cruzi
tcr
RefSeq
Leishmania major
lma
RefSeq
Entamoeba
Entamoeba histolytica
ehi
2005
RefSeq
Parabasalids
Trichomonas vaginalis
tva
RefSeq
Diatoms
Thalassiosira pseudonana
dtps
JGI
Prokaryotes
Category
Species
Com-
pleted
Source
Bacteria
Proteobacteria
Gamma/enterobacteria
Escherichia coli K-12 MG1655
eco
1997
RefSeq
Escherichia coli K-12 W3110
ecj
2001
RefSeq
Escherichia coli K-12 DH10B
ecd
2008
RefSeq
Escherichia coli O157 EDL933 (EHEC)
ece
2001
RefSeq
Escherichia coli O157 Sakai (EHEC)
ecs
2001
RefSeq
Escherichia coli CFT073 (UPEC)
ecc
2002
RefSeq
Escherichia coli UTI89 (UPEC)
eci
2006
RefSeq
Escherichia coli 536 (UPEC)
ecp
2006
RefSeq
Escherichia coli APEC O1
ecv
2006
RefSeq
Escherichia coli E24377A
ecw
2007
RefSeq
Escherichia coli HS
ecx
2007
RefSeq
Escherichia coli SECEC
ecm
2008
RefSeq
Escherichia coli ATCC 8739
ecl
2008
RefSeq
Salmonella enterica subsp. enterica serovar Typhi CT18
sty
2001
RefSeq
Salmonella enterica subsp. enterica serovar Typhi Ty2
stt
2003
RefSeq
Salmonella enterica subsp. enterica serovar Paratyphi A
spt
2004
RefSeq
Salmonella enterica subsp. enterica serovar Paratyphi B
spq
2007
RefSeq
Salmonella enterica subsp. enterica serovar Choleraesuis
sec
2005
RefSeq
Salmonella enterica subsp. arizonae
ses
2007
RefSeq
Salmonella typhimurium LT2
stm
2001
Refseq
Yersinia pestis CO92
ype
2001
RefSeq
Yersinia pestis KIM
ypk
2002
RefSeq
Yersinia pestis Mediaevails
ypm
2004
RefSeq
Yersinia pestis Antiqua
ypa
2006
RefSeq
Yersinia pestis Nepal516
ypn
2006
RefSeq
Yersinia pestis Pestoides
ypp
2007
RefSeq
Yersinia pestis Angola
ypg
2007
RefSeq
Yersinia pseudotuberculosis IP32953
yps
2004
RefSeq
Yersinia pseudotuberculosis IP31758
ypi
2007
RefSeq
Yersinia pseudotuberculosis YPIII
ypy
2008
RefSeq
Yersinia enterocolitica
yen
2007
RefSeq
Shigella flexneri 301 (serotype 2a)
sfl
2002
RefSeq
Shigella flexneri 2457T (serotype 2a)
sfx
2003
RefSeq
Shigella flexneri 8401 (serotype 5b)
sfv
2006
RefSeq
Shigella sonnei
ssn
2005
RefSeq
Shigella boydii Sb227
sbo
2005
RefSeq
Shigella boydii CDC 3083-94
sbc
2008
RefSeq
Shigella dysenteriae
sdy
2005
RefSeq
Erwinia carotovora
eca
2004
RefSeq
Erwinia tasmaniensis
eta
2008
RefSeq
Photorhabdus luminescens
plu
2003
RefSeq
Buchnera aphidicola APS
buc
2000
RefSeq
Buchnera aphidicola Sg
bas
2002
RefSeq
Buchnera aphidicola Bp
bab
2003
RefSeq
Buchnera aphidicola Cc
bcc
2006
RefSeq
Wigglesworthia glossinidia
wbr
2002
RefSeq
Sodalis glossinidius
sgl
2006
RefSeq
Enterobacter sp. 638
ent
2007
RefSeq
Enterobacter sakazakii
esa
2007
RefSeq
Klebsiella pneumoniae
kpn
2007
RefSeq
Citrobacter koseri ATCC BAA-895
cko
2007
RefSeq
Serratia proteamaculans
spe
2007
RefSeq
Candidatus Blochmannia floridanus
bfl
2003
RefSeq
Candidatus Blochmannia pennsylvanicus
bpn
2005
RefSeq
Gamma/others
Haemophilus influenzae Rd KW20 (serotype d)
hin
1995
RefSeq
Haemophilus influenzae 86-028NP (nontypeable)
hit
2005
RefSeq
Haemophilus influenzae PittEE
hip
2007
RefSeq
Haemophilus influenzae PittGG
hiq
2007
RefSeq
Haemophilus ducreyi
hdu
2003
RefSeq
Haemophilus somnus 129PT
hso
2006
RefSeq
Haemophilus somnus 2336
hsm
2008
RefSeq
Pasteurella multocida
pmu
2001
RefSeq
Mannheimia succiniciproducens
msu
2004
RefSeq
Actinobacillus pleuropneumoniae L20 (serotype 5b)
apl
2007
RefSeq
Actinobacillus pleuropneumoniae JL03 (serotype 3)
apj
2008
RefSeq
Actinobacillus pleuropneumoniae AP76 (serotype 7)
apa
2008
RefSeq
Actinobacillus succinogenes
asu
2007
RefSeq
Xylella fastidiosa 9a5c
xfa
2000
RefSeq
Xylella fastidiosa Temecula1
xft
2003
RefSeq
Xylella fastidiosa M12
xfm
2008
RefSeq
Xylella fastidiosa M23
xfn
2008
RefSeq
Xanthomonas campestris pv. campestris ATCC 33913
xcc
2002
RefSeq
Xanthomonas campestris pv. campestris 8004
xcb
2005
RefSeq
Xanthomonas campestris pv. vesicatoria
xcv
2005
RefSeq
Xanthomonas axonopodis
xac
2002
RefSeq
Xanthomonas oryzae KACC10331
xoo
2005
RefSeq
Xanthomonas oryzae MAFF311018
xom
2006
RefSeq
Stenotrophomonas maltophilia
sml
2008
RefSeq
Vibrio cholerae O1
vch
2000
RefSeq
Vibrio cholerae O395
vco
2007
RefSeq
Vibrio vulnificus CMCP6
vvu
2002
RefSeq
Vibrio vulnificus YJ016
vvy
2003
RefSeq
Vibrio parahaemolyticus
vpa
2003
RefSeq
Vibrio fischeri
vfi
2005
RefSeq
Vibrio harveyi
vha
2007
RefSeq
Photobacterium profundum
ppr
2004
RefSeq
Pseudomonas aeruginosa PAO1
pae
2000
RefSeq
Pseudomonas aeruginosa UCBPP-PA14
pau
2006
RefSeq
Pseudomonas aeruginosa PA7
pap
2007
RefSeq
Pseudomonas putida KT2440
ppu
2003
RefSeq
Pseudomonas putida F1
ppf
2007
RefSeq
Pseudomonas putida GB-1
ppg
2008
RefSeq
Pseudomonas putida W619
ppw
2008
RefSeq
Pseudomonas syringae pv. tomato DC3000
pst
2003
RefSeq
Pseudomonas syringae pv. syringae B728a
psb
2005
RefSeq
Pseudomonas syringae pv. phaseolicola 1448A
psp
2005
RefSeq
Pseudomonas fluorescens Pf-5
pfl
2005
RefSeq
Pseudomonas fluorescens PfO-1
pfo
2005
RefSeq
Pseudomonas entomophila
pen
2006
RefSeq
Pseudomonas mendocina
pmy
2007
RefSeq
Pseudomonas stutzeri
psa
2007
RefSeq
Cellvibrio japonicus
cja
2008
RefSeq
Psychrobacter arcticum
par
2005
RefSeq
Psychrobacter cryohalolentis
pcr
2006
RefSeq
Psychrobacter sp. PRwf-1
prw
2007
RefSeq
Acinetobacter sp. ADP1
aci
2004
RefSeq
Acinetobacter baumannii ATCC 17978
acb
2007
RefSeq
Acinetobacter baumannii SDF
abm
2008
RefSeq
Acinetobacter baumannii AYE
aby
2008
RefSeq
Acinetobacter baumannii ACICU
abc
2008
RefSeq
Shewanella oneidensis
son
2002
RefSeq
Shewanella denitrificans
sdn
2006
RefSeq
Shewanella frigidimarina
sfr
2006
RefSeq
Shewanella amazonensis
saz
2006
RefSeq
Shewanella baltica OS155
sbl
2007
RefSeq
Shewanella baltica OS185
sbm
2007
RefSeq
Shewanella baltica OS195
sbn
2007
RefSeq
Shewanella loihica
slo
2007
RefSeq
Shewanella putrefaciens
spc
2007
RefSeq
Shewanella sediminis
sse
2007
RefSeq
Shewanella pealeana
spl
2007
RefSeq
Shewanella sp. MR-4
she
2006
RefSeq
Shewanella sp. MR-7
shm
2006
RefSeq
Shewanella sp. ANA-3
shn
2006
RefSeq
Shewanella sp. W3-18-1
shw
2007
RefSeq
Shewanella halifaxensis
shl
2008
RefSeq
Shewanella woodyi ATCC51908
swd
2008
RefSeq
Idiomarina loihiensis
ilo
2004
RefSeq
Colwellia psychrerythraea
cps
2005
RefSeq
Pseudoalteromonas haloplanktis
pha
2005
RefSeq
Pseudoalteromonas atlantica
pat
2006
RefSeq
Saccharophagus degradans
sde
2006
RefSeq
Psychromonas ingrahamii
pin
2006
RefSeq
Marinobacter aquaeolei
maq
2007
RefSeq
Coxiella burnetii RSA 493
cbu
2003
RefSeq
Coxiella burnetii RSA 331
cbs
2007
RefSeq
Coxiella burnetii Dugway 5J108-111
cbd
2007
RefSeq
Legionella pneumophila Philadelphia 1
lpn
2004
RefSeq
Legionella pneumophila Lens
lpf
2004
RefSeq
Legionella pneumophila Paris
lpp
2004
RefSeq
Legionella pneumophila Corby
lpc
2007
RefSeq
Methylococcus capsulatus
mca
2004
RefSeq
Francisella tularensis subsp. tularensis SCHU S4
ftu
2004
RefSeq
Francisella tularensis subsp. tularensis FSC 198
ftf
2006
RefSeq
Francisella tularensis subsp. tularensis WY96-3418
ftw
2007
RefSeq
Francisella tularensis subsp. holarctica LVS
ftl
2006
RefSeq
Francisella tularensis subsp. holarctica OSU18
fth
2006
RefSeq
Francisella tularensis subsp. holarctica FTNF002-00
fta
2007
RefSeq
Francisella tularensis subsp. novicida U112
ftn
2006
RefSeq
Francisella tularensis subsp. mediasiatica FSC147
ftm
2008
RefSeq
Francisella philomiragia
fph
2008
RefSeq
Thiomicrospira crunogena
tcx
2005
RefSeq
Nitrosococcus oceani
noc
2005
RefSeq
Alkalilimnicola ehrlichei
aeh
2006
RefSeq
Halorhodospira halophila
hha
2007
RefSeq
Hahella chejuensis
hch
2005
RefSeq
Chromohalobacter salexigens
csa
2006
RefSeq
Alcanivorax borkumensis
abo
2006
RefSeq
Marinomonas sp. MWYL1
mmw
2007
RefSeq
Aeromonas hydrophila
aha
2006
RefSeq
Aeromonas salmonicida
asa
2007
RefSeq
Dichelobacter nodosus
dno
2007
RefSeq
Baumannia cicadellinicola
bci
2006
RefSeq
Candidatus Carsonella ruddii
crp
2006
RefSeq
Candidatus Ruthia magnifica
rma
2006
RefSeq
Candidatus Vesicomyosocius okutanii
vok
2007
RefSeq
Beta
Neisseria meningitidis MC58 (serogroup B)
nme
2000
RefSeq
Neisseria meningitidis Z2491 (serogroup A)
nma
2000
RefSeq
Neisseria meningitidis FAM18 (serogroup C)
nmc
2007
RefSeq
Neisseria meningitidis 053442 (serogroup C)
nmn
2007
RefSeq
Neisseria gonorrhoeae
ngo
2005
RefSeq
Neisseria gonorrhoeae NCCP11945
ngk
2008
RefSeq
Chromobacterium violaceum
cvi
2003
RefSeq
Ralstonia solanacearum
rso
2001
RefSeq
Ralstonia eutropha JMP134
reu
2005
RefSeq
Ralstonia eutropha H16
reh
2006
RefSeq
Ralstonia metallidurans
rme
2006
RefSeq
Cupriavidus taiwanensis
cti
2008
RefSeq
Burkholderia mallei ATCC 23344
bma
2004
RefSeq
Burkholderia mallei SAVP1
bmv
2007
RefSeq
Burkholderia mallei NCTC 10229
bml
2007
RefSeq
Burkholderia mallei NCTC 10247
bmn
2007
RefSeq
Burkholderia xenovorans
bxe
2006