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KEGG Organisms

Eukaryotes: 72+27+49    Bacteria: 663    Archaea: 52
1995: 2   1996: 2   1997: 8   1998: 7   1999: 6   2000: 18   2001: 28   2002: 38   2003: 46   2004: 67   2005: 90   2006: 138   2007: 191   2008: 91  

Eukaryotes

Category Species Com-
pleted		 Source
Animals Vertebrates Mammals Homo sapiens (human) hsa   RefSeq
Pan troglodytes (chimpanzee) ptr   RefSeq
Macaca mulatta (rhesus monkey) mcc   RefSeq
Mus musculus (mouse) mmu   RefSeq
Rattus norvegicus (rat) rno   RefSeq
Canis familiaris (dog) cfa   RefSeq
Bos taurus (cow) bta   RefSeq
Sus scrofa (pig) ssc   RefSeq
Equus caballus (horse) decb   RefSeq
Monodelphis domestica (opossum) mdo   RefSeq
Ornithorhynchus anatinus (platypus) oaa   RefSeq
Birds Gallus gallus (chicken) gga   RefSeq
Amphibians Xenopus laevis (African clawed frog) xla   RefSeq
Xenopus tropicalis (western clawed frog) xtr   RefSeq
Fishes Danio rerio (zebrafish) dre   RefSeq
Fugu rubripes (Japanese puffer fish) dfru   Ensembl
Tetraodon nigroviridis (green spotted puffer) dtni   GenBank
Oryzias latipes (Japanese medaka) dola   Ensembl
Ascidians Ciona intestinalis (sea squirt) dcin   JGI
Ciona savignyi (EST) ecsv   dbEST
Molgula tectiformis (EST) emte   dbEST
Echinoderms Strongylocentrotus purpuratus (purple sea urchin) spu   RefSeq
Strongylocentrotus purpuratus (purple sea urchin) (EST) espu   dbEST
Cnidarians Nematostella vectensis (sea anemone) nve   RefSeq
Insects Drosophila melanogaster (fruit fly) dme 2000 RefSeq
Drosophila pseudoobscura dpo   RefSeq
Drosophila ananassae ddan   FlyBase
Drosophila erecta dder   FlyBase
Drosophila grimshawi ddgr   FlyBase
Drosophila mojavensis ddmo   FlyBase
Drosophila persimilis ddpe   FlyBase
Drosophila sechellia ddse   FlyBase
Drosophila simulans ddsi   FlyBase
Drosophila virilis ddvi   FlyBase
Drosophila willistoni ddwi   FlyBase
Drosophila yakuba ddya   FlyBase
Anopheles gambiae (mosquito) aga   RefSeq
Aedes aegypti (yellow fever mosquito) aag   RefSeq
Apis mellifera (honey bee) dame   Ensembl
Bombyx mori (silkmoth) dbmo   Beijing
Tribolium castaneum (red flour beetle) tca   RefSeq
Nematodes Caenorhabditis elegans (nematode) cel 1998 RefSeq
Caenorhabditis briggsae cbr   RefSeq
Brugia malayi (filaria) bmy   RefSeq
Flatworms Schistosoma japonicum (fluke) (EST) esja   dbEST
Plants Dicotyledons mustard family Arabidopsis thaliana (thale cress) ath 2000 RefSeq
Arabidopsis thaliana (thale cress) (EST) eath   dbEST
Brassica napus (rape) (EST) ebna   dbEST
rue family Citrus sinensis (Valencia orange) (EST) ecsi   dbEST
mallow family Gossypium arboreum (cotton) (EST) egar   dbEST
Gossypium raimondii (EST) egra   dbEST
Gossypium hirsutum (upland cotton) (EST) eghi   dbEST
pea family Glycine max (soybean) (EST) egma   dbEST
Lotus japonicus (lotus) (EST) elja   dbEST
Medicago truncatula (barrel medic) (EST) emtr   dbEST
willow family Populus trichocarpa (black cottonwood) dpop   JGI
Populus trichocarpa (black cottonwood) (EST) epop   dbEST
Populus tremula (European aspen) (EST) eptp   dbEST
daisy family Helianthus annuus (sunflower) (EST) ehan   dbEST
Lactuca sativa (lettuce) (EST) elst   dbEST
Lactuca perennis (blue lettuce) (EST) elpe   dbEST
Lactuca saligna (willowleaf lettuce) (EST) elsi   dbEST
Lactuca virosa (wild lettuce) (EST) elvi   dbEST
Zinnia elegans (zinnia) (EST) ezel   dbEST
nightshade family Solanum lycopersicum (tomato) (EST) esly   dbEST
Solanum tuberosum (potato) (EST) estu   dbEST
Capsicum annuum (chile pepper) (EST) ecan   dbEST
Nicotiana tabacum (tabacco) (EST) enta   dbEST
Nicotiana benthamiana (EST) enbe   dbEST
grape family Vitis vinifera (wine grape) dvvi   Genoscope
Vitis vinifera (wine grape) (EST) evvi   dbEST
goosefoot family Beta vulgaris (beet) (EST) ebvl   dbEST
supurge family Euphorbia esula (spurge) (EST) eees   dbEST
Manihot esculent (tapioca) (EST) emec   dbEST
morning-glory family Ipomoea nil (Japanese morning glory) (EST) eini   dbEST
rose family Prunus persica (peach) (EST) epps   dbEST
Monocotyledons grass family Oryza sativa japonica (Japanese rice) osa   RefSeq
Oryza sativa (rice) (EST) eosa   dbEST
Oryza sativa japonica (Japanese rice) (EST) eosj   dbEST
Oryza sativa indica (Indian rice) (EST) eosi   dbEST
Hordeum vulgare (barley) (EST) ehvu   dbEST
Triticum aestivum (wheat) (EST) etae   dbEST
Zea mays (maize) (EST) ezma   dbEST
Saccharum officinarum (sugarcane) (EST) esof   dbEST
Sorghum bicolor (sorghum) (EST) esbi   dbEST
Sorghum propinquum (EST) espp   dbEST
Festuca arundinacea (tall fescue) (EST) efar   dbEST
lily family Allium cepa (onion) (EST) eacp   dbEST
Other seed plants pine family Pinus taeda (loblolly pine) (EST) epta   dbEST
Pinus pinaster (maritime pine) (EST) eppi   dbEST
Picea glauca (white spruce) (EST) epgl   dbEST
Picea sitchensis (sitka spruce) (EST) epsi   dbEST
Mosses Physcomitrella patens (EST) eppa   dbEST
Physcomitrella patens subsp. patens ppp   RefSeq
Physcomitrella patens subsp. patens (EST) eppp   dbEST
Red algae Cyanidioschyzon merolae cme 2004 U Tokyo
Green algae Ostreococcus lucimarinus olu   RefSeq
Ostreococcus tauri dota   Ghent
Chlamydomonas reinhardtii cre   RefSeq
Fungi Ascomycetes Saccharomycetes Saccharomyces cerevisiae sce 1997 RefSeq
Saccharomyces paradoxus dspd   SGD
Saccharomyces mikatae dsmi   SGD
Saccharomyces bayanus dsba   SGD
Ashbya gossypii (Eremothecium gossypii) ago 2004 RefSeq
Kluyveromyces lactis kla   RefSeq
Kluyveromyces waltii dkwa   Nature
Debaryomyces hansenii dha   RefSeq
Pichia stipitis pic   RefSeq
Vanderwaltozyma polyspora vpo   RefSeq
Candida albicans cal 2004 RefSeq
Candida glabrata cgr   RefSeq
Yarrowia lipolytica yli   RefSeq
Schizosaccharomycetes Schizosaccharomyces pombe spo 2002 RefSeq
Sordariomycete Neurospora crassa ncr   RefSeq
Podospora anserina pan   RefSeq
Magnaporthe grisea mgr   RefSeq
Fusarium graminearum fgr   RefSeq
Eurotiales Aspergillus nidulans ani   RefSeq
Aspergillus fumigatus afm   RefSeq
Aspergillus oryzae aor   RefSeq
Aspergillus niger ang   RefSeq
Basidiomycetes Cryptococcus neoformans JEC21 cne 2005 RefSeq
Cryptococcus neoformans B-3501A cnb   RefSeq
Phanerochaete chrysosporium dpch   JGI
Laccaria bicolor lbc   RefSeq
Ustilago maydis uma   RefSeq
Malassezia globosa mgl   RefSeq
Microsporidian Encephalitozoon cuniculi ecu 2002 RefSeq
Protists Choanoflagellate Monosiga brevicollis mbr   RefSeq
Diplomonad Giardia lamblia gla   RefSeq
Cellular slime mold Dictyostelium discoideum ddi 2005 RefSeq
Alveolates Apicomplexa Plasmodium falciparum 3D7 pfa 2002 RefSeq
Plasmodium falciparum Dd2 pfd   Broad
Plasmodium falciparum HB3 pfh   Broad
Plasmodium yoelii pyo   RefSeq
Plasmodium knowlesi dpkn   Sanger
Cryptosporidium parvum cpv 2004 RefSeq
Cryptosporidium hominis cho 2004 RefSeq
Theileria annulata tan 2005 RefSeq
Theileria parva tpv 2005 RefSeq
Ciliates Tetrahymena thermophila tet   RefSeq
Paramecium tetraurelia ptm   RefSeq
Euglenozoa Trypanosoma brucei tbr   RefSeq
Trypanosoma cruzi tcr   RefSeq
Leishmania major lma   RefSeq
Entamoeba Entamoeba histolytica ehi 2005 RefSeq
Parabasalids Trichomonas vaginalis tva   RefSeq
Diatoms Thalassiosira pseudonana dtps   JGI

Prokaryotes

Category Species Com-
pleted		 Source
Bacteria Proteobacteria Gamma/enterobacteria Escherichia coli K-12 MG1655 eco 1997 RefSeq
Escherichia coli K-12 W3110 ecj 2001 RefSeq
Escherichia coli K-12 DH10B ecd 2008 RefSeq
Escherichia coli O157 EDL933 (EHEC) ece 2001 RefSeq
Escherichia coli O157 Sakai (EHEC) ecs 2001 RefSeq
Escherichia coli CFT073 (UPEC) ecc 2002 RefSeq
Escherichia coli UTI89 (UPEC) eci 2006 RefSeq
Escherichia coli 536 (UPEC) ecp 2006 RefSeq
Escherichia coli APEC O1 ecv 2006 RefSeq
Escherichia coli E24377A ecw 2007 RefSeq
Escherichia coli HS ecx 2007 RefSeq
Escherichia coli SECEC ecm 2008 RefSeq
Escherichia coli ATCC 8739 ecl 2008 RefSeq
Salmonella enterica subsp. enterica serovar Typhi CT18 sty 2001 RefSeq
Salmonella enterica subsp. enterica serovar Typhi Ty2 stt 2003 RefSeq
Salmonella enterica subsp. enterica serovar Paratyphi A spt 2004 RefSeq
Salmonella enterica subsp. enterica serovar Paratyphi B spq 2007 RefSeq
Salmonella enterica subsp. enterica serovar Choleraesuis sec 2005 RefSeq
Salmonella enterica subsp. arizonae ses 2007 RefSeq
Salmonella typhimurium LT2 stm 2001 Refseq
Yersinia pestis CO92 ype 2001 RefSeq
Yersinia pestis KIM ypk 2002 RefSeq
Yersinia pestis Mediaevails ypm 2004 RefSeq
Yersinia pestis Antiqua ypa 2006 RefSeq
Yersinia pestis Nepal516 ypn 2006 RefSeq
Yersinia pestis Pestoides ypp 2007 RefSeq
Yersinia pestis Angola ypg 2007 RefSeq
Yersinia pseudotuberculosis IP32953 yps 2004 RefSeq
Yersinia pseudotuberculosis IP31758 ypi 2007 RefSeq
Yersinia pseudotuberculosis YPIII ypy 2008 RefSeq
Yersinia enterocolitica yen 2007 RefSeq
Shigella flexneri 301 (serotype 2a) sfl 2002 RefSeq
Shigella flexneri 2457T (serotype 2a) sfx 2003 RefSeq
Shigella flexneri 8401 (serotype 5b) sfv 2006 RefSeq
Shigella sonnei ssn 2005 RefSeq
Shigella boydii Sb227 sbo 2005 RefSeq
Shigella boydii CDC 3083-94 sbc 2008 RefSeq
Shigella dysenteriae sdy 2005 RefSeq
Erwinia carotovora eca 2004 RefSeq
Erwinia tasmaniensis eta 2008 RefSeq
Photorhabdus luminescens plu 2003 RefSeq
Buchnera aphidicola APS buc 2000 RefSeq
Buchnera aphidicola Sg bas 2002 RefSeq
Buchnera aphidicola Bp bab 2003 RefSeq
Buchnera aphidicola Cc bcc 2006 RefSeq
Wigglesworthia glossinidia wbr 2002 RefSeq
Sodalis glossinidius sgl 2006 RefSeq
Enterobacter sp. 638 ent 2007 RefSeq
Enterobacter sakazakii esa 2007 RefSeq
Klebsiella pneumoniae kpn 2007 RefSeq
Citrobacter koseri ATCC BAA-895 cko 2007 RefSeq
Serratia proteamaculans spe 2007 RefSeq
Candidatus Blochmannia floridanus bfl 2003 RefSeq
Candidatus Blochmannia pennsylvanicus bpn 2005 RefSeq
Gamma/others Haemophilus influenzae Rd KW20 (serotype d) hin 1995 RefSeq
Haemophilus influenzae 86-028NP (nontypeable) hit 2005 RefSeq
Haemophilus influenzae PittEE hip 2007 RefSeq
Haemophilus influenzae PittGG hiq 2007 RefSeq
Haemophilus ducreyi hdu 2003 RefSeq
Haemophilus somnus 129PT hso 2006 RefSeq
Haemophilus somnus 2336 hsm 2008 RefSeq
Pasteurella multocida pmu 2001 RefSeq
Mannheimia succiniciproducens msu 2004 RefSeq
Actinobacillus pleuropneumoniae L20 (serotype 5b) apl 2007 RefSeq
Actinobacillus pleuropneumoniae JL03 (serotype 3) apj 2008 RefSeq
Actinobacillus pleuropneumoniae AP76 (serotype 7) apa 2008 RefSeq
Actinobacillus succinogenes asu 2007 RefSeq
Xylella fastidiosa 9a5c xfa 2000 RefSeq
Xylella fastidiosa Temecula1 xft 2003 RefSeq
Xylella fastidiosa M12 xfm 2008 RefSeq
Xylella fastidiosa M23 xfn 2008 RefSeq
Xanthomonas campestris pv. campestris ATCC 33913 xcc 2002 RefSeq
Xanthomonas campestris pv. campestris 8004 xcb 2005 RefSeq
Xanthomonas campestris pv. vesicatoria xcv 2005 RefSeq
Xanthomonas axonopodis xac 2002 RefSeq
Xanthomonas oryzae KACC10331 xoo 2005 RefSeq
Xanthomonas oryzae MAFF311018 xom 2006 RefSeq
Stenotrophomonas maltophilia sml 2008 RefSeq
Vibrio cholerae O1 vch 2000 RefSeq
Vibrio cholerae O395 vco 2007 RefSeq
Vibrio vulnificus CMCP6 vvu 2002 RefSeq
Vibrio vulnificus YJ016 vvy 2003 RefSeq
Vibrio parahaemolyticus vpa 2003 RefSeq
Vibrio fischeri vfi 2005 RefSeq
Vibrio harveyi vha 2007 RefSeq
Photobacterium profundum ppr 2004 RefSeq
Pseudomonas aeruginosa PAO1 pae 2000 RefSeq
Pseudomonas aeruginosa UCBPP-PA14 pau 2006 RefSeq
Pseudomonas aeruginosa PA7 pap 2007 RefSeq
Pseudomonas putida KT2440 ppu 2003 RefSeq
Pseudomonas putida F1 ppf 2007 RefSeq
Pseudomonas putida GB-1 ppg 2008 RefSeq
Pseudomonas putida W619 ppw 2008 RefSeq
Pseudomonas syringae pv. tomato DC3000 pst 2003 RefSeq
Pseudomonas syringae pv. syringae B728a psb 2005 RefSeq
Pseudomonas syringae pv. phaseolicola 1448A psp 2005 RefSeq
Pseudomonas fluorescens Pf-5 pfl 2005 RefSeq
Pseudomonas fluorescens PfO-1 pfo 2005 RefSeq
Pseudomonas entomophila pen 2006 RefSeq
Pseudomonas mendocina pmy 2007 RefSeq
Pseudomonas stutzeri psa 2007 RefSeq
Cellvibrio japonicus cja 2008 RefSeq
Psychrobacter arcticum par 2005 RefSeq
Psychrobacter cryohalolentis pcr 2006 RefSeq
Psychrobacter sp. PRwf-1 prw 2007 RefSeq
Acinetobacter sp. ADP1 aci 2004 RefSeq
Acinetobacter baumannii ATCC 17978 acb 2007 RefSeq
Acinetobacter baumannii SDF abm 2008 RefSeq
Acinetobacter baumannii AYE aby 2008 RefSeq
Acinetobacter baumannii ACICU abc 2008 RefSeq
Shewanella oneidensis son 2002 RefSeq
Shewanella denitrificans sdn 2006 RefSeq
Shewanella frigidimarina sfr 2006 RefSeq
Shewanella amazonensis saz 2006 RefSeq
Shewanella baltica OS155 sbl 2007 RefSeq
Shewanella baltica OS185 sbm 2007 RefSeq
Shewanella baltica OS195 sbn 2007 RefSeq
Shewanella loihica slo 2007 RefSeq
Shewanella putrefaciens spc 2007 RefSeq
Shewanella sediminis sse 2007 RefSeq
Shewanella pealeana spl 2007 RefSeq
Shewanella sp. MR-4 she 2006 RefSeq
Shewanella sp. MR-7 shm 2006 RefSeq
Shewanella sp. ANA-3 shn 2006 RefSeq
Shewanella sp. W3-18-1 shw 2007 RefSeq
Shewanella halifaxensis shl 2008 RefSeq
Shewanella woodyi ATCC51908 swd 2008 RefSeq
Idiomarina loihiensis ilo 2004 RefSeq
Colwellia psychrerythraea cps 2005 RefSeq
Pseudoalteromonas haloplanktis pha 2005 RefSeq
Pseudoalteromonas atlantica pat 2006 RefSeq
Saccharophagus degradans sde 2006 RefSeq
Psychromonas ingrahamii pin 2006 RefSeq
Marinobacter aquaeolei maq 2007 RefSeq
Coxiella burnetii RSA 493 cbu 2003 RefSeq
Coxiella burnetii RSA 331 cbs 2007 RefSeq
Coxiella burnetii Dugway 5J108-111 cbd 2007 RefSeq
Legionella pneumophila Philadelphia 1 lpn 2004 RefSeq
Legionella pneumophila Lens lpf 2004 RefSeq
Legionella pneumophila Paris lpp 2004 RefSeq
Legionella pneumophila Corby lpc 2007 RefSeq
Methylococcus capsulatus mca 2004 RefSeq
Francisella tularensis subsp. tularensis SCHU S4 ftu 2004 RefSeq
Francisella tularensis subsp. tularensis FSC 198 ftf 2006 RefSeq
Francisella tularensis subsp. tularensis WY96-3418 ftw 2007 RefSeq
Francisella tularensis subsp. holarctica LVS ftl 2006 RefSeq
Francisella tularensis subsp. holarctica OSU18 fth 2006 RefSeq
Francisella tularensis subsp. holarctica FTNF002-00 fta 2007 RefSeq
Francisella tularensis subsp. novicida U112 ftn 2006 RefSeq
Francisella tularensis subsp. mediasiatica FSC147 ftm 2008 RefSeq
Francisella philomiragia fph 2008 RefSeq
Thiomicrospira crunogena tcx 2005 RefSeq
Nitrosococcus oceani noc 2005 RefSeq
Alkalilimnicola ehrlichei aeh 2006 RefSeq
Halorhodospira halophila hha 2007 RefSeq
Hahella chejuensis hch 2005 RefSeq
Chromohalobacter salexigens csa 2006 RefSeq
Alcanivorax borkumensis abo 2006 RefSeq
Marinomonas sp. MWYL1 mmw 2007 RefSeq
Aeromonas hydrophila aha 2006 RefSeq
Aeromonas salmonicida asa 2007 RefSeq
Dichelobacter nodosus dno 2007 RefSeq
Baumannia cicadellinicola bci 2006 RefSeq
Candidatus Carsonella ruddii crp 2006 RefSeq
Candidatus Ruthia magnifica rma 2006 RefSeq
Candidatus Vesicomyosocius okutanii vok 2007 RefSeq
Beta Neisseria meningitidis MC58 (serogroup B) nme 2000 RefSeq
Neisseria meningitidis Z2491 (serogroup A) nma 2000 RefSeq
Neisseria meningitidis FAM18 (serogroup C) nmc 2007 RefSeq
Neisseria meningitidis 053442 (serogroup C) nmn 2007 RefSeq
Neisseria gonorrhoeae ngo 2005 RefSeq
Neisseria gonorrhoeae NCCP11945 ngk 2008 RefSeq
Chromobacterium violaceum cvi 2003 RefSeq
Ralstonia solanacearum rso 2001 RefSeq
Ralstonia eutropha JMP134 reu 2005 RefSeq
Ralstonia eutropha H16 reh 2006 RefSeq
Ralstonia metallidurans rme 2006 RefSeq
Cupriavidus taiwanensis cti 2008 RefSeq
Burkholderia mallei ATCC 23344 bma 2004 RefSeq
Burkholderia mallei SAVP1 bmv 2007 RefSeq
Burkholderia mallei NCTC 10229 bml 2007 RefSeq
Burkholderia mallei NCTC 10247 bmn 2007 RefSeq
Burkholderia xenovorans bxe 2006